Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr3086g00003 ATGGGATCTGCGCAAAAGGGAATCTCACTAGTTTCATCAATCAGTGCCACTTCTCAAAATGCCACCCTTCTCCTTAAAAAGAGAAAAGAAAGAGAACCCACCAAGCGTGCAAAGAAAGGAAGTAGCACAATTGCAAGCAAGATGTGGCAAAGAAGCCACAACAAGTCTTCAGAGGAGAGGAAACTGGAGCTTAGGCTTGGTCCACCTGGTGAAGAGTCTCTCAATGAAAGCATCAAAAAATGCAACGACAGAGAAAGAAGTGAATCACCACTCACTCTTGGTTACTACTCAACTCAGAAAATTTCCACTTCTAACAAGCCAGGTCCTGGTGGTGCTATGTTGCCCTCTGCATGGACTTCCACATCCTACCACCAACACCAGGGTAAAGCTAAAGCTTCATCATTTCTTCAGCTCCAATCAAGTCAACAAAACATGATAGTGATGGGAAGGGATGTGCCACAACTCTCTTGTGTGGAGAAGAAGGCATTCTCATCCTCTTCTGCTAATACAGCTGTGTCCAAAAGAACTGCTGCTGGTCCAGTAGTGGGGTGGCCTCCAATTCGTTCCTTCAGGAAGAACATTGCAAGTGGAAGCTCTTCTAGGCTGCCTTCTGGGTCCCAGCAACATCAACATGTTGCTCCAGATAATGTTGCTAGCAAAAAACCTACTGACAACTCTGGTAAAGGGTTGTTTGTGAAGATCAATATGGATGGAGTTCCCATTGGGAGAAAAGTGGACATCAATGCTTATGACAGCTATGAAAAACTTTCCTCTGCTGTTGATGAACTCTTTAGAGGCCTCCTTATTATGATAATGAAACTTGATGCAGAGATGAATTTGTCTCATATATCCTTTTCCCACTGCTGTTCTGGTCAAAGAGATTCCTGTGGTGGTGGAATTCAAAACATGGAAGAGGAAGAGAAAACCAATACGGGTTTATTGGTTGGAAGTGGAGAATATACTCTTGTTTATGAGGACAATGAAGGAGACAGGATGCTTGTTGGAGATGTGCCGTGGCACATGTTTGTGTCGACAGTGAAGAGGCTGAGGGTGTTGAAGACTTCTGATCTTCCTGCTTTTACCCAAACACCTTCTTGTTCTCAGTTAGTAGTAAGCAAGACTAGCTACACCACTTCACTTGGCAATGACAAATCGAGGATATCAACCTAA 1170 0.4385 MGSAQKGISLVSSISATSQNATLLLKKRKEREPTKRAKKGSSTIASKMWQRSHNKSSEERKLELRLGPPGEESLNESIKKCNDRERSESPLTLGYYSTQKISTSNKPGPGGAMLPSAWTSTSYHQHQGKAKASSFLQLQSSQQNMIVMGRDVPQLSCVEKKAFSSSSANTAVSKRTAAGPVVGWPPIRSFRKNIASGSSSRLPSGSQQHQHVAPDNVASKKPTDNSGKGLFVKINMDGVPIGRKVDINAYDSYEKLSSAVDELFRGLLIMIMKLDAEMNLSHISFSHCCSGQRDSCGGGIQNMEEEEKTNTGLLVGSGEYTLVYEDNEGDRMLVGDVPWHMFVSTVKRLRVLKTSDLPAFTQTPSCSQLVVSKTSYTTSLGNDKSRIST 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr3086g00003 389 MobiDBLite consensus disorder prediction 195 223 - -
Mupr3086g00003 389 Pfam AUX/IAA family 62 357 IPR033389 -
Mupr3086g00003 389 MobiDBLite consensus disorder prediction 91 106 - -
Mupr3086g00003 389 Gene3D - 224 366 - -
Mupr3086g00003 389 MobiDBLite consensus disorder prediction 195 224 - -
Mupr3086g00003 389 FunFam Auxin-responsive protein 224 365 - -
Mupr3086g00003 389 SUPERFAMILY CAD & PB1 domains 222 351 - -
Mupr3086g00003 389 ProSiteProfiles PB1 domain profile. 229 354 IPR000270 GO:0005515
Mupr3086g00003 389 MobiDBLite consensus disorder prediction 52 67 - -
Mupr3086g00003 389 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 59 356 IPR003311 GO:0005634|GO:0006355
Mupr3086g00003 389 MobiDBLite consensus disorder prediction 24 38 - -
Mupr3086g00003 389 MobiDBLite consensus disorder prediction 24 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr3086g00003 Mupr-Chr3086 29497 32906 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr3086g00003 213 361 B3 DNA Binding Superfamily AT4G23980 25.503 1.83e-09 57.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Mupr3086g00003 AUX_IAA 3.7e-66 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr3086g00003 K14484 - gmx:100793822 496.123