Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr3073g00003 ATGCAAATGATACCCGGTGACCCCTTTTCACTCCCCACTTCCCTCGCAGGCCTTGCCAGTGAACAAAACCCTAACCCTAATCCCCCTCCACCCACCAAGAAGAAGAGAAATCTGCCAGGAACACCAGATCCAGATGCCGAGGTCATTGCTCTTTCACCAAAGACTCTCATGGCCACGAACCGTTTCATCTGTGAAATATGCAACAAAGGCTTTCAGAGGGACCAGAATCTTCAGCTTCATCGGAGGGGTCACAACCTTCCGTGGAAGCTACGACAGAGGTCAAATAAAGAGGTGCGAAAGAAGGTATATATCTGTCCGGAGAAGACCTGTGTCCACCACGACGCCGCCAGGGCTCTCGGCGACCTCACCGGAATAAAGAAGCATTACAGCAGAAAACACGGCGAGAAGAAGTGGAAGTGTGAAAAGTGCTCCAAAAAATACGCAGTCCAATCTGATTGGAAAGCTCACACCAAAACCTGCGGCACCAGAGAGTATAAGTGCGACTGTGGCACTCTCTTCTCCAGGAAGGACAGTTTTATTACTCACAGGGCCTTCTGCGATGCTTTAGCGGAAGAGAGTTCAAGACTCAGCTCAGTTGCTACAACTAGTCTAAATTTTAGGAGCGAAGAGGCAACTGCGATGAACACACAGGCTAGTTTGTCGTCACGTGGATTAATCACTGGTCAGGGAATGCAAAATGTTCCACAATTTGGTCCACATGGGTTTCGTTTAATGGGGATGTGTGCAGATCAACAAAGACCAAACTTGTCACTGTGGTTGAACCAGGGAAATCACCACATTAACAATCCACTTGATGTGGCATCATCAAGTTCTTCAGGTTTAAATTTGCCTGAGGTTGTGCACATGGCACAAGCAAATAATTCCTTACTTGGTTCTTCTTCACTGTTCTCCAATTTTGGAATGCCTGCATCTAATTCATCTAGTCCAAACATTTCCTTATCTCCACATTTGAAAAAGGGAGAAGGTGGAGCTTCAGATTTTGCATCCATTTACTCTGAGAGTCAAAACAACAATTCAAACTCAGCTTCCCCAATGTCAGCCACTGCCCTTTTGCAGAAAGCAGCACAAATGGGTTCCACTAGAAGCACCAACCCTTCAATTTTCAGTGGCAGTTTTGGTGTGATGAGTTCATCTTCCACCCAAACTACTAGTCTCACTAGCAACAACAATGCAAACCAAAGCTGTGACCAACTTAACCAAGCCTTTCAGAACATGAACCAGCATGAGAATTTCAATGCAACCAGCAGTGGTGCAACTATGTTGGGTAGCTCCACTAACTTAAGCTCATTGGCACATTCATCAAACGGCTTTGATCAATTTCTGATGCAAAATAATGTGGAACCAAGTGAGGTGGAGCAGTTGAAGCTCCACCCTGGGTCAAACACAGTGGAACATAACTTGACAAGAGATTTTCTTGGGATGAGTAGAGGTGGAGGTGGACATCCATTCCTACCCCAAGAGCTTGCAAAGTTTGCTTCCTTAGGCTCATCAATGGGTTTGAACCAATTCACTGCAGGCCATCAATGA 1548 0.4593 MQMIPGDPFSLPTSLAGLASEQNPNPNPPPPTKKKRNLPGTPDPDAEVIALSPKTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRSNKEVRKKVYICPEKTCVHHDAARALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHTKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEESSRLSSVATTSLNFRSEEATAMNTQASLSSRGLITGQGMQNVPQFGPHGFRLMGMCADQQRPNLSLWLNQGNHHINNPLDVASSSSSGLNLPEVVHMAQANNSLLGSSSLFSNFGMPASNSSSPNISLSPHLKKGEGGASDFASIYSESQNNNSNSASPMSATALLQKAAQMGSTRSTNPSIFSGSFGVMSSSSTQTTSLTSNNNANQSCDQLNQAFQNMNQHENFNATSSGATMLGSSTNLSSLAHSSNGFDQFLMQNNVEPSEVEQLKLHPGSNTVEHNLTRDFLGMSRGGGGHPFLPQELAKFASLGSSMGLNQFTAGHQ 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr3073g00003 515 ProSitePatterns Zinc finger C2H2 type domain signature. 64 84 IPR013087 -
Mupr3073g00003 515 Gene3D Classic Zinc Finger 124 199 - -
Mupr3073g00003 515 Coils Coil 395 415 - -
Mupr3073g00003 515 FunFam protein indeterminate-domain 5, chloroplastic-like 116 195 - -
Mupr3073g00003 515 Gene3D Classic Zinc Finger 40 117 - -
Mupr3073g00003 515 Pfam Zinc-finger double-stranded RNA-binding 62 84 IPR022755 -
Mupr3073g00003 515 SMART c2h2final6 103 133 IPR013087 -
Mupr3073g00003 515 SMART c2h2final6 138 158 IPR013087 -
Mupr3073g00003 515 SMART c2h2final6 62 84 IPR013087 -
Mupr3073g00003 515 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 22 488 IPR031140 -
Mupr3073g00003 515 MobiDBLite consensus disorder prediction 23 37 - -
Mupr3073g00003 515 FunFam protein indeterminate-domain 12-like 41 109 - -
Mupr3073g00003 515 MobiDBLite consensus disorder prediction 1 45 - -
Mupr3073g00003 515 SUPERFAMILY beta-beta-alpha zinc fingers 61 158 IPR036236 -
Mupr3073g00003 515 ProSiteProfiles Zinc finger C2H2 type domain profile. 62 84 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr3073g00003 Mupr-Chr3073 17811 19810 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr3073g00003 1 502 IDZ Gene Family AT5G03150 48.122 2.16e-136 402
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mupr3073g00003 zf-C2H2_jaz 7.6e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr3073g00003 K25870 - gmx:100812495 793.497