Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr3062g00006 ATGTCGTATGTGCCTCCGCACCTCAGAAACGCGAGCGCAACCACCGTCGCCACCGCTAGAGCCCCCTCCGTAACCCTTGACAACAACCATCACCACGCCAAGCTCGCATTCCCCTCCAGCAACACCAATTGCTCTCCCGCTTCTTTCCACAATGGCCCTCGCCGGAGCACCGCCGCTCCTCCCTCGCCGCGGATTCTCGCCGCCCCCGACGCCGTCTTCCCTCTCTGGCAACCCTCCCAACGCGCTTCCCGCATGACCCCCGACCAGATTGAAGAGGTGCGGTCCCGGCTTAATCTTGATGTTACCGTTGCATCCGACTCTCCTCCTGCACCTGCACCGATAGAATCGTTTACTGATATGTGTTTGCATCCGAGTATCATGAAGGATATTGCTTACCATGAATACACCAGGCCAACATCGATCCAGGCACAGGCGATGCCAATTGCTCTCAGTGGAAGGGATCTATTGGGTTGTGCTGAAACTGGTAGTGGAAAGACTGCAGCTTTCACAATTCCTATGATACAGCATTGCTTGGCCCAACCTCCAATTCGGCGCAATGATGGTCCCCTGGCATTAGTGTTGGCTCCTACCAGAGAACTTGCTCAACAAATAGAAAAAGAGGTTAAAGCATTTAGCAGATCTCTCGAGTCATTAAAAACTGCCATAGTTGTGGGTGGAACTAACATTGAAAAGCAGAGGTCTGAACTAAGAGCCGGAGTTGAAATAGCAGTTGCCACCCCTGGAAGATTCATTGATCACTTACAACAAGGCAACACTTCCCTCTCTAGAATTTCATTTGTTGTTCTAGACGAGGCAGATAGAATGCTTGATATGGGTTTTGAACCACAGATACGAGAGGTAATGAGAAATCTTCCAGAGAAGCATCAAACACTGCTGTTTAGTGCGACTATGCCTGTGGAGATTGAAGCATTAGCAAAGGAGTACTTAGCTAGTCCAGTGCAAGTCAAGGTGGGGAAAGTGAGTAGCCCAACAACTAATGTTTCACAAACTCTTGTGAAAATTTCTGAAAATGAGAAGATTGATCGGCTTCTAGATCTGCTTGTAGAGGAGGCATCACAGGCTGGAAAATGTGGTCATCCATTTCCACTAACAATCGTGTTTGTGGAGAGGAAGACAAGGTGTGATGAAGTTGCTGAAGCATTGGTAGCTCAAGGATTATCTGCAGTTTCTCTTCACGGTGGTCGCAGTCAGAGTGAAAGAGAGGCTGCCTTGCATGATTTTCGGAGTGGCTCAACCAACATTTTGGTGGCCACTGATGTCGCATCTCGTGGCTTGGATGTCACAGGAGTGTCGCATGTCATCAATCTAGATCTTCCAAAGACCATGGAAGATTATGTACACCGGATTGGAAGGACAGGGCGTGCGGGATCAACTGGCTTAGCTACTTCATTTTACACTGATCGTGACATGTTCCTCGTGGCAAATATAAGGAAAGCAATAGCTGATGCTGAATCTGGGAACACACAAACATTTGCAACTGGAAAGGTTGCTAGAAGGAAGGAGAAAGAAGCAGCAGCTGCACAAAAAGAGGCAAATATTGCTTTATCTAAACAGTTAGGATCGGGAGCTTCTTCAATTAACATTGAAGATAAGTATAAATTCATGATTAATGCTGCAAACAGTAAAAAAGAGGGCTCAGCAGATAGTGCCTGGGATGATTAA 1683 0.4759 MSYVPPHLRNASATTVATARAPSVTLDNNHHHAKLAFPSSNTNCSPASFHNGPRRSTAAPPSPRILAAPDAVFPLWQPSQRASRMTPDQIEEVRSRLNLDVTVASDSPPAPAPIESFTDMCLHPSIMKDIAYHEYTRPTSIQAQAMPIALSGRDLLGCAETGSGKTAAFTIPMIQHCLAQPPIRRNDGPLALVLAPTRELAQQIEKEVKAFSRSLESLKTAIVVGGTNIEKQRSELRAGVEIAVATPGRFIDHLQQGNTSLSRISFVVLDEADRMLDMGFEPQIREVMRNLPEKHQTLLFSATMPVEIEALAKEYLASPVQVKVGKVSSPTTNVSQTLVKISENEKIDRLLDLLVEEASQAGKCGHPFPLTIVFVERKTRCDEVAEALVAQGLSAVSLHGGRSQSEREAALHDFRSGSTNILVATDVASRGLDVTGVSHVINLDLPKTMEDYVHRIGRTGRAGSTGLATSFYTDRDMFLVANIRKAIADAESGNTQTFATGKVARRKEKEAAAAQKEANIALSKQLGSGASSINIEDKYKFMINAANSKKEGSADSAWDD 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr3062g00006 560 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 346 509 IPR001650 -
Mupr3062g00006 560 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 115 143 IPR014014 GO:0003724
Mupr3062g00006 560 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 187 483 IPR027417 -
Mupr3062g00006 560 CDD DEADc 126 323 - -
Mupr3062g00006 560 CDD SF2_C_DEAD 334 472 - -
Mupr3062g00006 560 Gene3D - 76 326 IPR027417 -
Mupr3062g00006 560 Pfam DEAD/DEAH box helicase 139 309 IPR011545 GO:0003676|GO:0005524
Mupr3062g00006 560 MobiDBLite consensus disorder prediction 37 52 - -
Mupr3062g00006 560 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 268 276 IPR000629 -
Mupr3062g00006 560 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 146 322 IPR014001 -
Mupr3062g00006 560 FunFam probable ATP-dependent RNA helicase DDX17 75 325 - -
Mupr3062g00006 560 Gene3D - 328 522 IPR027417 -
Mupr3062g00006 560 SMART ultradead3 134 337 IPR014001 -
Mupr3062g00006 560 MobiDBLite consensus disorder prediction 37 62 - -
Mupr3062g00006 560 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 83 516 - -
Mupr3062g00006 560 Coils Coil 504 524 - -
Mupr3062g00006 560 SMART helicmild6 382 463 IPR001650 -
Mupr3062g00006 560 Pfam Helicase conserved C-terminal domain 346 463 IPR001650 -
Mupr3062g00006 560 Coils Coil 201 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr3062g00006 Mupr-Chr3062 63118 70859 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr3062g00006 115 485 Eukaryotic Initiation Factors Gene Family AT1G72730 35.467 4.86e-70 229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr3062g00006 K12823 - gmx:100787545 993.416