Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr3034g00007 ATGGATGCCGTCGATTCAACACCAAATGCCCCTCCCATCCCTCCCTACGATCCATCTCCGCAGAACCGCGTACCTCCACCAGAGTATCACAACCCTCAACACCAGTCAGAAACCGGACAAAATTCTAACGGCACCAGCGACGGAAAACCATCGGAGAACGGTCAGGGTGCCACCGATAACCACAGTTTGCATCCTCAGATTTCGAAGTCCTTGCTCTCCGAGAATGGGTTGACGCGTAGCGGCACCGACAAGGATCAATCCGGTGGCGAGGAGGAGACCACCAGCAAACGCCGCCGCCGGAGTCGGTGGGACCCGCAGCCTGAATCGAACGAGCAGAGTGGCGGCGAATCGGGAACCGGGCCGAAGAAGCGGAAGTCTCGTTGGGCCGACGACGAGCCGAAGGCGGTGATTCAGCTTCCCGATTTCATGGGCGGTATTGAATTTGATCCCGAGATTCAGTCTTTGAACAGTAGGCTTCTTGAGATTAGTCGAATGTTACAGTCAGGTTTGCCCTTAGATGATCGCCCTGAAGGTGCTCGATCTCCTTCGCCTGAACCTATATATGATAACATGGGTATTAGAATTAACACTAGGGAATATCGTGCGCGTGAGAGATTGCAGAAGGAGAGGCAGGAAATTATATCTCAGATTATAAAGAAGAACCCAGCTTTCAAGCCACCTGCGGATTATAGACCTCCGAAGCTTCAGAAGAAGCTTTATATACCGATGAAAGAATACCCTGGTTACAATTTTATAGGGCTTATTATTGGTCCCAGAGGTAACACCCAGAAGCGGATGGAGAAAGAAACTGGTGCTAAAATTGTGATTCGCGGCAAAGGATCGGTCAAAGAGGGCAGGCTGCAGCAGAAGAGGGATTTGAAACCCGACCCTTCGGAAAATGAAGATTTGCATGTTTTGGTGGAGGCTGAGACCCCGGAGTCTCTTGAGGCTGCGGCGGGTATGGTGGAGAAGCTCTTGCAGCCGGTGGATGAGGTATTGAATGAGCATAAGAGGCAACAGCTTAGGGAACTTGCTGCATTAAATGGAACTATAAGGGATGAGGAGTATTGCAGGCTGTGTGGTGAGCCTGGTCATCGCCAATACGCCTGTCCTACTAGGACTTCAACGTTTAAGAGTGAAGTTGTCTGTAAGCATTGTGGGGATGGTGGTCATCCAAGCATAGATTGTCCGGTGAAGGGTGCTACTGGGAAGAAGATGGATGATGAGTATCAGAATTTCCTAGCAGAGTTGGGAGGTTCTGTTCCTGAATCTGCGACTAAGCAAAGCAGTACATTGGCAATTGGTTCAGGCACTTCTGGAAGCAATCCCCCTTGGGCTAACAGTTCTGGTACTGCTGGTGGTGCGCCTCAAGCTGGCTTAGGGGCTGCTGCAGTTAAAAAGGAAATTGATGATACAAATTTGTACATAGGGTATTTGCCGCCCACCCTTGATGATGATGGCCTGATCCAATTATTTCAACAATTTGGTGAGATTGTTATGGCCAAAGTTATTAAGGACCGAATGTCAGGTTTAAGTAAAGGATACGGTTTTGTTAAGTATGCTGATATCACAATGGCAAACAATGCAATCTTGGCCATGAATGGTTATCGGCTTGAGGGTCGAACCATTGCAGTGAGAGTTGCTGGTAAGCCTCCTCAGCCTGTTGTACCTCCTGGTCCACCAGCATCAGCTGTGCCCACTTATCCTGTTCCTAGCCAGCCACTTGGTGCCTATCCATCTCAACAGTATGCTGCTGGTGGCCCCCTTGGGAGTGCCCCTCCTGGGAGTTACGGTGGTACCCCAGTGCCATGGGGACCCCCTGTTCCTCCTCCATATGCTCCCTATGCTCCTCCTCCACCTGGTTCAACTATGTATCCACCTATGCAAGGTCAACCTATGCCTCCTTATGGGGTTCAATATCCTCCTTCTGTGCATACTGGCCCCCCTGGTGCCCCATCCCAGCCTGCAACTTCTAGTGAAATGCAGCATAGTTACCCTCCTGGAGTGCAGTCTGACAATAGTACCTCAACTCAGTCCGTACCAGCCAGTGTATATGGCAACTCGGTACCTTCAATGCCACCTGCACCACAACCTACATATCCTGCATCTTATGGATATCCACCTTACTATAATGCAGTCCCTCCACCACCTCCCCCTCCTGCTCCAATTCCTGTGTCAACTTCAGACCAATCCCTCAACATTGCAAATGTGCCTTGGGCCAACAATCCTTTAGTGCCACCTCCTCCTTCATCTGCAGAGAAGACAGCATATGGTGCAGATTTATCTCAGAACATTGGAAATGTGCCTAGGGCCACAAATCCACCCGTGCCTCCCCCTGCTTCATCAGCTGAGAAGACTTCATATGCTGCTGATTCAGAGTATGAGAAAAGGGCCCTTACAGAAAAGGGCAAACTGGCGCTGTCTGCAAAAAATTAA 2436 0.5012 MDAVDSTPNAPPIPPYDPSPQNRVPPPEYHNPQHQSETGQNSNGTSDGKPSENGQGATDNHSLHPQISKSLLSENGLTRSGTDKDQSGGEEETTSKRRRRSRWDPQPESNEQSGGESGTGPKKRKSRWADDEPKAVIQLPDFMGGIEFDPEIQSLNSRLLEISRMLQSGLPLDDRPEGARSPSPEPIYDNMGIRINTREYRARERLQKERQEIISQIIKKNPAFKPPADYRPPKLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMEKETGAKIVIRGKGSVKEGRLQQKRDLKPDPSENEDLHVLVEAETPESLEAAAGMVEKLLQPVDEVLNEHKRQQLRELAALNGTIRDEEYCRLCGEPGHRQYACPTRTSTFKSEVVCKHCGDGGHPSIDCPVKGATGKKMDDEYQNFLAELGGSVPESATKQSSTLAIGSGTSGSNPPWANSSGTAGGAPQAGLGAAAVKKEIDDTNLYIGYLPPTLDDDGLIQLFQQFGEIVMAKVIKDRMSGLSKGYGFVKYADITMANNAILAMNGYRLEGRTIAVRVAGKPPQPVVPPGPPASAVPTYPVPSQPLGAYPSQQYAAGGPLGSAPPGSYGGTPVPWGPPVPPPYAPYAPPPPGSTMYPPMQGQPMPPYGVQYPPSVHTGPPGAPSQPATSSEMQHSYPPGVQSDNSTSTQSVPASVYGNSVPSMPPAPQPTYPASYGYPPYYNAVPPPPPPPAPIPVSTSDQSLNIANVPWANNPLVPPPPSSAEKTAYGADLSQNIGNVPRATNPPVPPPASSAEKTSYAADSEYEKRALTEKGKLALSAKN 811
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr3034g00007 811 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 474 543 IPR000504 GO:0003723
Mupr3034g00007 811 FunFam splicing factor-like protein 1 227 355 - -
Mupr3034g00007 811 Gene3D K Homology domain, type 1 227 355 IPR036612 GO:0003723
Mupr3034g00007 811 Pfam KH domain 250 323 IPR004088 GO:0003723
Mupr3034g00007 811 MobiDBLite consensus disorder prediction 623 649 - -
Mupr3034g00007 811 FunFam splicing factor-like protein 1 452 554 - -
Mupr3034g00007 811 Gene3D - 439 554 IPR012677 -
Mupr3034g00007 811 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 235 361 IPR036612 GO:0003723
Mupr3034g00007 811 MobiDBLite consensus disorder prediction 650 686 - -
Mupr3034g00007 811 MobiDBLite consensus disorder prediction 84 106 - -
Mupr3034g00007 811 PANTHER RNA-BINDING PROTEIN RELATED 85 627 IPR045071 -
Mupr3034g00007 811 CDD KH-I_BBP 234 327 - -
Mupr3034g00007 811 MobiDBLite consensus disorder prediction 171 190 - -
Mupr3034g00007 811 MobiDBLite consensus disorder prediction 623 793 - -
Mupr3034g00007 811 MobiDBLite consensus disorder prediction 8 27 - -
Mupr3034g00007 811 MobiDBLite consensus disorder prediction 431 453 - -
Mupr3034g00007 811 MobiDBLite consensus disorder prediction 756 770 - -
Mupr3034g00007 811 SUPERFAMILY RNA-binding domain, RBD 468 560 IPR035979 GO:0003676
Mupr3034g00007 811 ProSiteProfiles Zinc finger CCHC-type profile. 357 371 IPR001878 GO:0003676|GO:0008270
Mupr3034g00007 811 MobiDBLite consensus disorder prediction 1 136 - -
Mupr3034g00007 811 MobiDBLite consensus disorder prediction 28 83 - -
Mupr3034g00007 811 SMART rrm1_1 473 546 IPR000504 GO:0003723
Mupr3034g00007 811 ProSiteProfiles Type-1 KH domain profile. 250 322 - -
Mupr3034g00007 811 MobiDBLite consensus disorder prediction 118 134 - -
Mupr3034g00007 811 FunFam splicing factor 1 355 408 - -
Mupr3034g00007 811 Gene3D - 356 408 - -
Mupr3034g00007 811 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 472 550 IPR000504 GO:0003723
Mupr3034g00007 811 SUPERFAMILY Retrovirus zinc finger-like domains 353 399 IPR036875 GO:0003676|GO:0008270
Mupr3034g00007 811 MobiDBLite consensus disorder prediction 691 725 - -
Mupr3034g00007 811 MobiDBLite consensus disorder prediction 280 301 - -
Mupr3034g00007 811 SMART kh_6 235 327 IPR004087 GO:0003676
Mupr3034g00007 811 Gene3D - 149 226 IPR047086 -
Mupr3034g00007 811 Pfam Splicing factor 1 helix-hairpin domain 124 231 IPR032570 -
Mupr3034g00007 811 SMART c2hcfinal6 356 372 IPR001878 GO:0003676|GO:0008270
Mupr3034g00007 811 SMART c2hcfinal6 382 398 IPR001878 GO:0003676|GO:0008270
Mupr3034g00007 811 ProSiteProfiles Zinc finger CCHC-type profile. 383 397 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr3034g00007 Mupr-Chr3034 47222 51987 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr3034g00007 472 603 Eukaryotic Initiation Factors Gene Family AT3G16380 30.216 3.42e-12 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr3034g00007 K13095 - gmx:100800982 1253.43