Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr3029g00001 ATGAATATTTTATCAGGATGGCTTATGAGAGCGGGCCAGGGCCAGCTTATAGACTCTGATCAACCTGACAAATCTTCTGAAAACCAGCAAACTGAACAAGTGTGTAGCTTTTTCAGAAAACCAGTTAATAAAAAGAATATAAGGAAACGGACTATTGATAATGAAGATAATGAGGAGAACTCAAACAAAGAAACTTCTCTGTTGCATATTCAGAAGAAGACTTCAAAGCCTGACAATAAGTTGTACTTTTCCACTGGCTCTTCAAAAAGCTCTGCATCTGCTGAACCAAGTGAAGAATCTGGAAAACCAGTCTTTCAGTTTCAGTCTTCAAAAGAAATTCAAGTTCAACATGATAGCAAAGCAACAGCAATTCTAGAGACTGAGACTGAGTTTTCAAAAGATGCTCGTGCCATCCGTGAAAGATCTCTTAAGCAAGCAGCGGAGAGTCTGAAAGGGAAAAGCACAAGTTCTGAGGGTGAAAAATTATACAAGGGAATGAACAGTTACACAGACTACAAGGCTGGCTTTCGTAGAGAACAAACAATTGCTAGTGAAAAAGCTGGTGGGGCACATGGTCCTCTTAGGGCTTCAGCTCATATAAGGGTTTCAGCAAGGTTTGATTATCAGCCTGACATATGTAAGGATTATAAGGAAACTGGTTACTGTGGATATGGTGATTCATGTAAGTTTATGCATGATCGAGGGGATTACAAGCCTGGGTGGCAGTTGGAGAAGGAATGGGAAGAAGCTGAGAAAGCAAGGAAGATGAGATTGGCTGCAGGTGAGGATGAAGATGAGGGGGGTGCTAATTTGACTGATGAAGATGATGATGATTCATTACCGTTTGCATGTTTCATTTGTAGAAAGCCTTTTGTGGATCCTGTTGTAACCAAGTGCAAGCACTACTTCTGTGAGCATTGTGCATTGAAGCATCATGCTAAGAATAAGAAGTGCTTTGTCTGCAATCAACCAACGCTTGGCATTTTTAATGTTGCTCATGAGATACGCAGGAAGATGGCCGAGGACAAATAA 1032 0.4089 MNILSGWLMRAGQGQLIDSDQPDKSSENQQTEQVCSFFRKPVNKKNIRKRTIDNEDNEENSNKETSLLHIQKKTSKPDNKLYFSTGSSKSSASAEPSEESGKPVFQFQSSKEIQVQHDSKATAILETETEFSKDARAIRERSLKQAAESLKGKSTSSEGEKLYKGMNSYTDYKAGFRREQTIASEKAGGAHGPLRASAHIRVSARFDYQPDICKDYKETGYCGYGDSCKFMHDRGDYKPGWQLEKEWEEAEKARKMRLAAGEDEDEGGANLTDEDDDDSLPFACFICRKPFVDPVVTKCKHYFCEHCALKHHAKNKKCFVCNQPTLGIFNVAHEIRRKMAEDK 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr3029g00001 343 SMART c3hfinal6 207 234 IPR000571 GO:0046872
Mupr3029g00001 343 ProSiteProfiles Zinc finger RING-type profile. 284 322 IPR001841 -
Mupr3029g00001 343 Gene3D - 205 239 - -
Mupr3029g00001 343 SMART ring_2 284 321 IPR001841 -
Mupr3029g00001 343 SUPERFAMILY RING/U-box 283 326 - -
Mupr3029g00001 343 SUPERFAMILY CCCH zinc finger 206 239 IPR036855 GO:0046872
Mupr3029g00001 343 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 282 341 IPR013083 -
Mupr3029g00001 343 FunFam RING finger protein 113A 282 341 - -
Mupr3029g00001 343 MobiDBLite consensus disorder prediction 18 37 - -
Mupr3029g00001 343 MobiDBLite consensus disorder prediction 47 76 - -
Mupr3029g00001 343 CDD RING-HC_RNF113A_B 277 330 - -
Mupr3029g00001 343 MobiDBLite consensus disorder prediction 11 104 - -
Mupr3029g00001 343 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 208 233 IPR000571 GO:0046872
Mupr3029g00001 343 Pfam Zinc finger, C3HC4 type (RING finger) 283 325 - -
Mupr3029g00001 343 ProSiteProfiles Zinc finger C3H1-type profile. 207 235 IPR000571 GO:0046872
Mupr3029g00001 343 FunFam Zinc finger CCCH domain-containing protein 1 205 239 - -
Mupr3029g00001 343 ProSitePatterns Zinc finger RING-type signature. 299 308 IPR017907 -
Mupr3029g00001 343 PANTHER ZINC FINGER PROTEIN 183 30 343 IPR039971 -
Mupr3029g00001 343 MobiDBLite consensus disorder prediction 77 104 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr3029g00001 22 343 C2H2 Transcription Factor Family AT1G01350 68.323 8.90e-167 466
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mupr3029g00001 zf-C3HC4_3 9.1e-09 CL0229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr3029g00001 K13127 - gmx:100787434 597.43