Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr2975g00011 ATGTGTGTTGAGCTTGGCTGGTTCCCCAAACTCTATCCACCGAAATCACAGCTACACCTTTCATCCTGCAATAATTTGATGGGAAGAGTTAAATTGAAGATAAAGAAATTAGAGAGCATTAGCAATCGACATGTCACTTATTCAAAGCGTAAAAGTGGAATTGTAAAGAAAGCAAAGGAATTGTCGATACTATGTGATATTGATATTCTCCTTCTCATGTTTTCTCCAACAGGAAAGCCAACTTTACTACAAGGAGAGCGCAGCAATATTGAGGAGGTCATTGCAAAATTTGCTCAACTTAGCCCACAAGAAAGGGCCAAAAGGAAAATGGAGAGCCTTGAAGCGCTAAAGAAAACCTTCAAGAAGTTGGACCATGATGTAAAAATACAAGATTTCTTAGGTTCAAGCTATTGGAATAATCTAGAGAAGATCAATAACTTAGAACATCTTAGGCAAATGGAAGACTCACTACGGGAATCAATCAATCGAGTGTGCCTACAGAAGGAAAATCTAGGAAAGCACCAACTCATTTCACTTGAATGTGCTAACCAGATGCAAGAAGGGATGACATTACCCTTGATGATGGCAAGTCTGCAAGAATCCCAACCCCTGTCTTGGCTTTTGAATAATGATAATCATCAGTTGATGTTACCTAGTGAACCGAATGATAATACCAATAGAGATGCTGAGTGCTCAACTGACATTTCACTCCCAAGCTATTCTGGTTATATTGGGAACAGCAAACTTGAAGTTGGAAGCTCTCCCCAGGTCACCACTACTTTGTGTCAGGGAGGTGGTGCCATGAATGAGTTAAACGGAACTACTTACTTAAATGTGCAACGATGTGACCAGTTTGCATACCCTCCTCCACCAGATATTGAGGAAGTGAAACATTTCCCAACAATGAACAGTAAATCAAACACCGTGGATTACCAAGTTAATAACAGCTTTGATCTTCCTAGATCACTGTTTGAAAATGGACATCAGTTTTGGAATTCTGCTTCTGGATCTTGTGGGATTGCCATGTATAATGAGAACTGCTACCATAGGGGGAAACATACAGTGGGGTCAAACTGCCATGTCGAAATATAA 1092 0.4011 MCVELGWFPKLYPPKSQLHLSSCNNLMGRVKLKIKKLESISNRHVTYSKRKSGIVKKAKELSILCDIDILLLMFSPTGKPTLLQGERSNIEEVIAKFAQLSPQERAKRKMESLEALKKTFKKLDHDVKIQDFLGSSYWNNLEKINNLEHLRQMEDSLRESINRVCLQKENLGKHQLISLECANQMQEGMTLPLMMASLQESQPLSWLLNNDNHQLMLPSEPNDNTNRDAECSTDISLPSYSGYIGNSKLEVGSSPQVTTTLCQGGGAMNELNGTTYLNVQRCDQFAYPPPPDIEEVKHFPTMNSKSNTVDYQVNNSFDLPRSLFENGHQFWNSASGSCGIAMYNENCYHRGKHTVGSNCHVEI 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr2975g00011 363 CDD MADS_SRF_like 28 110 IPR033897 GO:0000981|GO:0000987|GO:0045944
Mupr2975g00011 363 Gene3D - 40 122 IPR036879 GO:0003677|GO:0046983
Mupr2975g00011 363 Coils Coil 103 123 - -
Mupr2975g00011 363 FunFam Agamous-like MADS-box protein AGL30 40 122 - -
Mupr2975g00011 363 ProSiteProfiles MADS-box domain profile. 27 79 IPR002100 GO:0003677|GO:0046983
Mupr2975g00011 363 SMART madsneu2 27 86 IPR002100 GO:0003677|GO:0046983
Mupr2975g00011 363 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 37 81 IPR002100 GO:0003677|GO:0046983
Mupr2975g00011 363 SUPERFAMILY SRF-like 28 121 IPR036879 GO:0003677|GO:0046983
Mupr2975g00011 363 PANTHER SERUM RESPONSE FACTOR HOMOLOG 29 205 - -
Mupr2975g00011 363 PRINTS MADS domain signature 64 85 IPR002100 GO:0003677|GO:0046983
Mupr2975g00011 363 PRINTS MADS domain signature 49 64 IPR002100 GO:0003677|GO:0046983
Mupr2975g00011 363 PRINTS MADS domain signature 29 49 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr2975g00011 Mupr-Chr2975 89298 94251 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr2975g00011 27 272 Type I MADS-box Gene Family AT2G03060 46.619 2.73e-70 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mupr2975g00011 SRF-TF 3.8e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr2975g00011 - - pvu:PHAVU_003G189100g 570.466