Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr2959g00001 ATGCAACATATTCCAAGATCCAAGACAACCCTATTGTCTCTAGAATCTAGCTACTACATGTTAGTTGTCAAGTGCTGCCTCAGTTGGCACCATGTTGGTCACACAAGACCTTTCTCTCTATCAAGGCATGGTGAAGACCCATCTGCAGCATACTCAACAGCATCTGAGCCTAGAGGGCTAGAGGAAGCAGTGATTACATTAATCCCAGTGATTCACTATAAGGCAGAGGAAGGGGACAGAGACTTTGGTGAAAGAAGCCTCAGTGAGTGTGCAGTTTGCTTGAGTGAGTTTCAGCAAGATGAGAAGCTGAGGGTCATACCAAACTGTAGCCATGTCTTTCACATTGATTGCATAGATGTTTGGCTTCAGAACAATGCACACTGCCCACTTTGTAGAAGAATTGTTTCCTTGACTAGCCAAGTCCATGTTGACCAACTCAACCTTCTCACTCCAAGGCCTTCCCCTCAGTTCCAAAGCCAAAGCATTGAAAACCTCATTGCTGCTGATGCTGAAGGTTTTGTTGTGATTGATTTGGATGGTGAAAATGATAGGGACCAAAACTTGCAAGGAAGACAAGAAGAGTTAGCAACAGGTCCTATTGTTAGAGTTTCTTCACAAAGGAAGTTGTTGGAACAGGAGAAAGCAAGAAAGCTTCAAAAAGTGACCAGCTTGGGAGATGAGTGTATTGGTGTTAGAGCCAAGGTTGAAAGATTATCAGTTCAAGCCATGAGGAGGTCTTTCTCCATGGACTCATCAGTGGATAGACAGTTCTATGGGGCAGTTCAACAGGCTTTACAACAGCAACAAAATGGGCCTGTCCATGAGGAAAACACAATTGAAGCTTGTGGCAGTAGTGGTAGAGTCAAGAGATCATTCTTTTCTTTTGGACATGGAAGCAGATCAAGAAGTGCTGTACTACCAGTTTATTTGGACCCCTGA 939 0.4388 MQHIPRSKTTLLSLESSYYMLVVKCCLSWHHVGHTRPFSLSRHGEDPSAAYSTASEPRGLEEAVITLIPVIHYKAEEGDRDFGERSLSECAVCLSEFQQDEKLRVIPNCSHVFHIDCIDVWLQNNAHCPLCRRIVSLTSQVHVDQLNLLTPRPSPQFQSQSIENLIAADAEGFVVIDLDGENDRDQNLQGRQEELATGPIVRVSSQRKLLEQEKARKLQKVTSLGDECIGVRAKVERLSVQAMRRSFSMDSSVDRQFYGAVQQALQQQQNGPVHEENTIEACGSSGRVKRSFFSFGHGSRSRSAVLPVYLDP 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr2959g00001 312 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 48 136 IPR013083 -
Mupr2959g00001 312 PANTHER RING-H2 FINGER PROTEIN ATL16 17 308 IPR044600 GO:0016567|GO:0016740
Mupr2959g00001 312 Pfam Ring finger domain 89 132 IPR001841 -
Mupr2959g00001 312 SMART ring_2 90 131 IPR001841 -
Mupr2959g00001 312 SUPERFAMILY RING/U-box 74 138 - -
Mupr2959g00001 312 CDD RING-H2_EL5-like 89 132 - -
Mupr2959g00001 312 FunFam E3 ubiquitin-protein ligase ATL6 48 138 - -
Mupr2959g00001 312 ProSiteProfiles Zinc finger RING-type profile. 90 132 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr2959g00001 Mupr-Chr2959 14640 15740 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr2959g00001 17 312 C3H Transcription Factor Family AT1G04360 41.104 3.66e-63 202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr2959g00001 - - gmx:100814827 431.409