Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr2927g00001 ATGGACAACGAGATCGATGTTCCTTCCTTCTTTATCTGCCCCATTTCGTTAGAAATCATGAAGGATCCAGTGACGGTCTCCACGGGCATCACCTATGACCGTGAAAGCATCGAAACGTGGTTGTTCTCGAAGAAAAACAAGACATGCCCCGTCACGAAACAACCCTTGTTAGATTACACCGATCTCACCCCTAACCACACTCTTCGGAGACTCATTCAAGCGTGGTGTACCATGAACGCTTCTCACGGCATCGAGAGGATCCCAACTCCTAAGCCTCCCGTTAACAAAAACCAAATCTCAAAGCTTCTCAAAGACGCTTCTCACTCCCCTCTCACTTGCCTCGGAAGGCTCAAATCCATTGCTTCGGGAAGCGAGACAAACAAACGGTGCATGGAAGCCTCGGGTGCCGTTGAATTCCTGGCATCGATTGTAATAAACAACAACATTGATTCTTCAAGTTCACTAGAGGCTGACCCAAATGAGGCATTCGAGTTGAAAACAAATATAATCGATGAAGCGTTGAGCTTGCTTCATAATCTTCATTTATCGGAACAAGGATTGAAGACTCTCTTGAGCTTCAAAAACGGAGAATTTATTCAGTCCTTAACAAGAGTCATGAAGAAGGGGTTCTTTGAATCACGTGCCTACGCAGTTTTCTTGTTGAAATCGATGTCCGATGTAGCTGATCCAGTGCAACTATTGCATCTAAGCCAGGAGCTATTCGTTGAACTAGTACAGGTCTTGAAGGATCAGATTTCAGAAAAGACTTCAAAAGCCACACTTCAAACCCTGATCCAATTCTCTCTTTGGGGGAGGAACAGGATCAAAGCCGTGGAAGCAGGAACTGTTCCCGTTTTGATAGAACTTCTTCTCGACTGCAAGGAGAGAAAGCCTTGTGAGATGATGCTAGTGCTATTGGAGACACTGTGCCAGTGTGCTGAGGGAAGAGCAGAATTGTTAAGTCACGGAGCAGGTCTTGCCATTGTGTCCAAAAAGATTCTAAGAGTTTCGATGTTGGCGAATGATAGGGCTATTAAGATTCTTCTCTTTGTTTCCAAATTCTCCGCAACTCCACATGTTGTTCAAGAAATGCTGAAACTGGGCGTGGTCGCGAAACTCTGCTTGGTGCTTCAGGTGGACAGTGGAAACAAGGCTAAGGAAAAAGCAAGAGAGATTCTCAAATTGCATGCTCGGTCGTGGAGGAATTCTCCATGCGTACCGAGCAATTTGTTTTCTTCATATCCGGCTCTTGAACATTAA 1260 0.4516 MDNEIDVPSFFICPISLEIMKDPVTVSTGITYDRESIETWLFSKKNKTCPVTKQPLLDYTDLTPNHTLRRLIQAWCTMNASHGIERIPTPKPPVNKNQISKLLKDASHSPLTCLGRLKSIASGSETNKRCMEASGAVEFLASIVINNNIDSSSSLEADPNEAFELKTNIIDEALSLLHNLHLSEQGLKTLLSFKNGEFIQSLTRVMKKGFFESRAYAVFLLKSMSDVADPVQLLHLSQELFVELVQVLKDQISEKTSKATLQTLIQFSLWGRNRIKAVEAGTVPVLIELLLDCKERKPCEMMLVLLETLCQCAEGRAELLSHGAGLAIVSKKILRVSMLANDRAIKILLFVSKFSATPHVVQEMLKLGVVAKLCLVLQVDSGNKAKEKAREILKLHARSWRNSPCVPSNLFSSYPALEH 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr2927g00001 419 Pfam U-box domain 7 79 IPR003613 GO:0004842|GO:0016567
Mupr2927g00001 419 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 86 IPR013083 -
Mupr2927g00001 419 SUPERFAMILY RING/U-box 4 83 - -
Mupr2927g00001 419 CDD RING-Ubox_PUB 8 58 IPR045210 -
Mupr2927g00001 419 FunFam RING-type E3 ubiquitin transferase 1 85 - -
Mupr2927g00001 419 Gene3D - 100 402 IPR011989 -
Mupr2927g00001 419 SMART Ubox_2 10 75 IPR003613 GO:0004842|GO:0016567
Mupr2927g00001 419 ProSiteProfiles U-box domain profile. 6 82 IPR003613 GO:0004842|GO:0016567
Mupr2927g00001 419 SUPERFAMILY ARM repeat 113 383 IPR016024 -
Mupr2927g00001 419 PANTHER WDSAM1 PROTEIN 4 407 IPR045185 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr2927g00001 Mupr-Chr2927 2042 3753 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr2927g00001 1 416 U-box Gene Family AT3G52450 57.370 1.75e-176 498
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr2927g00001 - - gmx:100811258 727.628