Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr2909g00002 ATGGCGAACAACAAGAGCGGAAAGAAACCAATGAGTCTCAACGACAGTCACTATCGTTTCCTCCAAGATCACTCGGCTCCCCCCAAACCCTCATCCAAACCCTTCGATGAAGAATCAATCGATTTCGATTCTCCACACTTAGCCCGAAAACAACAACACGAAAACATCCCCCAATTTTCCGCAATCACCGACTTCGATTCTCCAATCGGGTTAAACTCGGATGAGAAACAAGAACCAATCAAGGTACATGAGCCAGAAGAAGAAGCTCCATTCAGCGATATTCCCCAGTTTTCGGTTAACTGTTTCCCTAGGCAAAACTCGGACGAGAAACACGAACCAATCAAGTTTCAAGAAGAAGAAGAAGCTCCACCCGACGTGGTTAATTCTTCCCCTAAGGAAGAAAAGAAGACGAAGGTGAAAGTGCAGGGGCGACGCCGCCTCTGCAAGGTTGCGCATGAAGACACTGGCAAAAGTGTGGCGGTGAATGAATTCAAGTTTGATGAACTCATAGACCTTGATTCGCCGGTTCCAGCACCGAGAAACGTGATCCAGATTGAGGAGAGTGGGGGCAAGAATGAAATTAGGGATATTTTGAATGAACTGAACTCCAAGTTTGAGTCGTTGTCGGTTGAGAGGAAGCCAGGGCCAAAGCATGTTGAGGGTTTGGTTGGAGGGAAAGTAAGTTGTGATGATGAGGGTTTAGAGTATGGGAGTGCAGGGTCTTCGTTTTCTCCACAACATGAGAGTTTGTCAGAGGGTACTAAGAATGGTGATGATGGTGTTGAGTATGATTTAGATGATTCTGTTCAAGAGTTGGATAATATTGAGCCTGAGAATGATGGTTCTATTACCATGACTGGCCCCAGATCGACTTATAAGTTGCCGGGTAAAATTGCGAAAATGTTGTATCCACATCAGCGGGATGGGTTGAAGTGGCTCTGGTCTTTGCATTGTCTGGGAAAAGGTGGAATCTTGGGCGATGACATGGGTTTAGGGAAAACAATGCAGATGTGTGGCTTTCTAGCTGGACTGTTTCATTCTCGTTTAATTAGAAGGGCGTTGATTGTAGCCCCCAAAACCTTGTTGCCCCATTGGATCAAAGAATTGTCAGCTGTTGGTCTATCTGAGAAGACAAGAGAATATTTTGCAACTTCTACAAAACTCAGAGAATATGAACTTCAGTACATACTTCAGGACAAAGGAGTTCTTCTGACAACATATGATATTGTCCGCAACAATTCTAAGTCCTTACGGGGGGATAATTATTTTGACGATGAAGAAAGTGAAGATGGCGCTATATGGGACTACATGATACTTGATGAGGGGCACCTTATAAAGAACCCAAGCACACAAAGAGCTAAAAGTTTGCTTGAAATACCAAGTGCTCATCGCATTATCATTAGTGGCACGCCATTGCAAAATAATCTGAAGGAGTTGTGGGCACTGTTCAATTTCTGTTGCCCGGAGTTGCTTGGTGACAACAAATGGTTCAAAGAAATATTTGAAAAGCCCATACTTCGTGGAAATGAAAAAAATGCTTCTGATAGGGAGAAGCGTACTGGTTCATCTGTAGCAAAGGAGCTAAGAGATCGTATTCAACCTTATTTTTTAAGACGTTTGAAGAGTGAGGTTTTCAGTCAAGACGATAAGAAAACAACTGCAGAACTTTCTCAGAAACAAGAGATCATCGTGTGGCTTCGATTGACCAATGTTCAGCGGCATCTTTATGAAGCATTTCTGAAGAGTGAGATTGTTCTCTCAGCATTTGATGGCTCACCACTGGCTGCCCTTACAATTTTGAAGAAAATATGTGATCATCCACTTCTGTTGACAAAGCGGGCAGCTGAGGATGTGTTGGAAGGGATGGACTCAATGCTAAAGCCAGAAGAGGCTAATGTTGCTGAAAAATTGGCAATGTACATAGCAGATGTTGCAGACACAGATAAGTTTAAAGAAGAGCAAGACGTGTCATGCAAAATTTCCTTCATTATGTCATTATTGGATAATTTGATCCCAGAAGGGCATAATGTGCTTATCTTTTCTCAGACTCGCAAGATGCTTAATCTTATTCAGGAATGCCTAGCATCCAAAGGTTATGACTTTTTACGAATTGATGGCACAACAAAAGCCAGTGACAGACTAAGGATTGTTAATGATTTCCAGGAAGGTGTTGGAGCTCCTATATTTCTCTTGACATCTCAGGTTGGTGGTTTAGGACTAACACTTACAAGAGCAGATCGTGTGATTGTAGTTGATCCTGCTTGGAACCCTAGTACGGATAATCAAAGTGTTGACCGTGCATATCGAATTGGTCAAAAGAAAGATGTTCTTGTATATAGACTGATGACGTGCGGAACTGTTGAAGAAAAGATCTACAGGAAACAGGTATACAAAGGCGGATTATTCAAAACTGCTACTGAACATAAAGAACAAATTCGGTACTTCAGCCAGCAGGATCTTAGGGAGCTTTTCAGCCTTCCTAAAGAAGGATTTGATGTATCTGTTACACAAAGGCAATTGAATGAGGAGCATGATCGTCAACATACAGTTGATGACTCTTTCAAAGCACATATAAAGTTCTTGAAAAGTCAAGGCATAGCTGGAGTTAGTCACCACAGTTTACTCTTTTCCAAGACAGCGCCAGTTCAAGCTGATGCCGAGGATGATGAAGTTACAAGGAATCATGGGGCCAAATATATTGGAACTTCAAGATCATCTTCAAATGAGCATATCGCTGATGGAGCCGAGTTTGCATTTAAACCTAAGGATGTTGCGTCAAGCAAAAAAGGTTCTTCTCCTAGCAGTGCTGGTAAATTGACCGAGTCAGAAATCAAGGATAAAATTAACCGGATCTCCCGGACGCTCTCAAATGCGGCGATGATTTCTAAATTACCTGACAAGGGCGAGAAACTAAAGAAACGGCTTGCGGGGCTGAATTTAGAGCTCGCTGAACTGAAGAGGGAAGAAAGAAATGTAGTTGATTTCGATGATTTTACTTCTGAATTTCAACGA 3012 0.424 MANNKSGKKPMSLNDSHYRFLQDHSAPPKPSSKPFDEESIDFDSPHLARKQQHENIPQFSAITDFDSPIGLNSDEKQEPIKVHEPEEEAPFSDIPQFSVNCFPRQNSDEKHEPIKFQEEEEAPPDVVNSSPKEEKKTKVKVQGRRRLCKVAHEDTGKSVAVNEFKFDELIDLDSPVPAPRNVIQIEESGGKNEIRDILNELNSKFESLSVERKPGPKHVEGLVGGKVSCDDEGLEYGSAGSSFSPQHESLSEGTKNGDDGVEYDLDDSVQELDNIEPENDGSITMTGPRSTYKLPGKIAKMLYPHQRDGLKWLWSLHCLGKGGILGDDMGLGKTMQMCGFLAGLFHSRLIRRALIVAPKTLLPHWIKELSAVGLSEKTREYFATSTKLREYELQYILQDKGVLLTTYDIVRNNSKSLRGDNYFDDEESEDGAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPLQNNLKELWALFNFCCPELLGDNKWFKEIFEKPILRGNEKNASDREKRTGSSVAKELRDRIQPYFLRRLKSEVFSQDDKKTTAELSQKQEIIVWLRLTNVQRHLYEAFLKSEIVLSAFDGSPLAALTILKKICDHPLLLTKRAAEDVLEGMDSMLKPEEANVAEKLAMYIADVADTDKFKEEQDVSCKISFIMSLLDNLIPEGHNVLIFSQTRKMLNLIQECLASKGYDFLRIDGTTKASDRLRIVNDFQEGVGAPIFLLTSQVGGLGLTLTRADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVLVYRLMTCGTVEEKIYRKQVYKGGLFKTATEHKEQIRYFSQQDLRELFSLPKEGFDVSVTQRQLNEEHDRQHTVDDSFKAHIKFLKSQGIAGVSHHSLLFSKTAPVQADAEDDEVTRNHGAKYIGTSRSSSNEHIADGAEFAFKPKDVASSKKGSSPSSAGKLTESEIKDKINRISRTLSNAAMISKLPDKGEKLKKRLAGLNLELAELKREERNVVDFDDFTSEFQR 1004
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr2909g00002 1004 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 662 821 IPR001650 -
Mupr2909g00002 1004 MobiDBLite consensus disorder prediction 83 140 - -
Mupr2909g00002 1004 Gene3D - 561 858 IPR027417 -
Mupr2909g00002 1004 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 314 489 IPR014001 -
Mupr2909g00002 1004 MobiDBLite consensus disorder prediction 1 54 - -
Mupr2909g00002 1004 FunFam Protein CHROMATIN REMODELING 24 281 559 - -
Mupr2909g00002 1004 SMART ultradead3 297 500 IPR014001 -
Mupr2909g00002 1004 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 554 834 IPR027417 -
Mupr2909g00002 1004 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 291 539 IPR027417 -
Mupr2909g00002 1004 Pfam Helicase conserved C-terminal domain 659 771 IPR001650 -
Mupr2909g00002 1004 Coils Coil 191 211 - -
Mupr2909g00002 1004 PANTHER SNF2/RAD54 FAMILY MEMBER 108 981 - -
Mupr2909g00002 1004 CDD SF2_C_SNF 651 782 - -
Mupr2909g00002 1004 Pfam SNF2-related domain 317 609 IPR000330 GO:0005524|GO:0140658
Mupr2909g00002 1004 Coils Coil 968 988 - -
Mupr2909g00002 1004 SMART helicmild6 688 771 IPR001650 -
Mupr2909g00002 1004 MobiDBLite consensus disorder prediction 105 140 - -
Mupr2909g00002 1004 MobiDBLite consensus disorder prediction 236 260 - -
Mupr2909g00002 1004 Gene3D - 284 560 IPR038718 -
Mupr2909g00002 1004 MobiDBLite consensus disorder prediction 30 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr2909g00002 Mupr-Chr2909 10224 20761 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr2909g00002 295 821 RAD5 or RAD16-like Gene Family AT3G16600 25.253 1.49e-26 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mupr2909g00002 SNF2_N 7.5e-50 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr2909g00002 K20093 - gmx:100779283 1726.84