Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr2900g00001 ATGAAATCAAACAAACGAGAAACCAGATCACCAGCAGTTGGAAGCTCATGCTTTGCATTAAAACTTGGCTGTTTGCTTCTGCTAACTGCTTTGCCAATCGCCACCAATTCCAACACACCCCAAATCTTCCCTTTTCCCTTTTCTAATATGCAAATGATGCCCGGTGACCCCTTTTCCCTATCCACTTCCATCGGAGCCTTCACTCAAGAGCAAAACACAAACCCTAACCCTAAACCTAACCCTCCTCCCAAGAAGAAGAGAAACCTTCCAGGAACACCAGATCCAGATGCCGAGGTCATTGCTCTCTCCCCGAAGACCCTCATGGCCACGAACCGATTCATATGCGAAATATGCAATAAAGGGTTCCAGAGAGACCAAAACCTTCAGCTTCACCGAAGGGGTCACAACCTTCCATGGAAGCTACGCCAGAGATCCAACAAAGAGGTAAGGAAGAAGGTTTATATCTGCCCCGAACAAACGTGCGTCCACCACGACCCAGCAAGAGCACTCGGCGACCTCACTGGCATCAAAAAGCACTTCAGCAGAAAGCACGGCGAGAAGAAGTGGAAGTGTGAAAAGTGCTCCAAGAAATACGCAGTCCAATCAGATTGGAAAGCCCACACCAAAACCTGCGGGACTAGAGAATACAAATGCGACTGTGGCACCCTCTTCTCCAGGAAGGACAGTTTCATTACCCACAGAGCATTTTGCGATGCGTTGGCTGAAGAGAGCGCAAGGCTCACCTCAGTTACCACAACAAATCTAAATTTCAAGAGTGAAGAGGGTAGTAATGTGATGAACTCGCAGCAACAGCAGCAGCATGGTTTGGGGCATGGACTAATTGCAGCACAGGGTCTTCATCAAAACGTTTCTGGCATTTCTCAATTTGGACCACCTGGTTTTCGTTTGGATTTTAATGGAATGGAGCAACAAAGGCCAAGCTTATCGCTGTGGTTGAACCAGGGGAATCATAATAATAATGTTAATAACAGTAATAATGCTCCAGATGTGGGACCCAACTACATGTCGTCATGCTCGGCCGAGATTGTGCAAATGGCTCAGGCTAATGCCTTGATGGGTTCTTCATCGATGGTGTCTAATTTTGGAGTGCCTCCGGGTTCTAGTTCAACTGGTGCAAACCTTTCTCTGTCGTCGATACCTATTGGGAAAAGAGGGGAAGGAAGTGGAACTGTAGTGGACTTGGCTTCTATTTATTCTGAGGGTCAAAACAAGCAATCAAAACCTGCTTCACCCATGTCAGCCACTGCGCTTCTTCAGAAAGCGGCACAGATGGGTTCCACCAGAAACACCAACCCTTCCATTTTCAGTGGTAGTTTTGGTTCAGTCATCAACTCACCTAATTCCTCACAAACTACCAGTCTCAATAACAATAACGGTAGTGCAGCCATGATGCTTCCAAGTAATACTACTACTGCCACTGACTTTAGCTCATTGACGCATTCATCAAACACTTTTGACCAACTTGTGATGCAAGCCAATGGGGGGTTGCAAACTGAGCCTGTCAAGTTGAAGCTTCATTCAAACGCCGTGGAGCATAATTTCACAAGGGATTTTCTCGGCGTGAGTGGAGGAGGAGGAGGAGGAGGAGGACGAGGAGGAGGTGCTGGCCCTCAGTTCCTCCCCCAAGAACTTGCAAAGTTTGCTTCCCTAGGGTCTCCAATGGGGTTGAGCCAATTCACGAGTAATCATCAATGA 1716 0.4738 MKSNKRETRSPAVGSSCFALKLGCLLLLTALPIATNSNTPQIFPFPFSNMQMMPGDPFSLSTSIGAFTQEQNTNPNPKPNPPPKKKRNLPGTPDPDAEVIALSPKTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRSNKEVRKKVYICPEQTCVHHDPARALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHTKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEESARLTSVTTTNLNFKSEEGSNVMNSQQQQQHGLGHGLIAAQGLHQNVSGISQFGPPGFRLDFNGMEQQRPSLSLWLNQGNHNNNVNNSNNAPDVGPNYMSSCSAEIVQMAQANALMGSSSMVSNFGVPPGSSSTGANLSLSSIPIGKRGEGSGTVVDLASIYSEGQNKQSKPASPMSATALLQKAAQMGSTRNTNPSIFSGSFGSVINSPNSSQTTSLNNNNGSAAMMLPSNTTTATDFSSLTHSSNTFDQLVMQANGGLQTEPVKLKLHSNAVEHNFTRDFLGVSGGGGGGGGRGGGAGPQFLPQELAKFASLGSPMGLSQFTSNHQ 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr2900g00001 571 Gene3D Classic Zinc Finger 91 165 - -
Mupr2900g00001 571 ProSiteProfiles Zinc finger C2H2 type domain profile. 113 135 IPR013087 -
Mupr2900g00001 571 SMART c2h2final6 189 209 IPR013087 -
Mupr2900g00001 571 SMART c2h2final6 154 184 IPR013087 -
Mupr2900g00001 571 SMART c2h2final6 113 135 IPR013087 -
Mupr2900g00001 571 FunFam protein indeterminate-domain 5, chloroplastic-like 167 246 - -
Mupr2900g00001 571 FunFam protein indeterminate-domain 12-like 92 160 - -
Mupr2900g00001 571 Gene3D Classic Zinc Finger 168 246 - -
Mupr2900g00001 571 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 69 540 IPR031140 -
Mupr2900g00001 571 ProSitePatterns Zinc finger C2H2 type domain signature. 115 135 IPR013087 -
Mupr2900g00001 571 Pfam Zinc-finger double-stranded RNA-binding 113 135 IPR022755 -
Mupr2900g00001 571 SUPERFAMILY beta-beta-alpha zinc fingers 112 209 IPR036236 -
Mupr2900g00001 571 MobiDBLite consensus disorder prediction 68 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr2900g00001 Mupr-Chr2900 10563 12797 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr2900g00001 50 311 IDZ Gene Family AT5G03150 64.706 2.69e-124 373
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mupr2900g00001 zf-C2H2_jaz 8.5e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr2900g00001 K25870 - gmx:100801182 780.4