Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr286g00007 ATGGCCTTTGATCACTACATTTCCCAGGAATGGAAAACCATCCCAGATTCTATATCAGTGACAGAAAATTTTGATGGGTGTTTTGATTGCAACATCTGCTTAGACTTTGCGCATGAACCTGTTGTCACCCTTTGTGGGCACCTATATTGCTGGCCCTGCATCTACAAGTGGCTCCATGTTCAAAGTGCTTCTCTTGCACCTGATGAGCATCCACAATGCCCTGTTTGCAAAGATGACATATCTCATACCACAATGGTTCCTCTCTATGGGCGAGGCCAGGCCATAGCTCATAGTGATCGTGATAGGAAGGCGTCCTATAGAGGTATTTTTATACCTCCAAGACCACCTGCTATGGGTGCTCAATCTCTCGTCTCAACATCATCTCAAAGTGATCAGCAACTTCCATATCGCAATCCTTATCAGAACCCCCAAGTAGAGGACGATGACACATCATCACAGATGCTCAATCCTAGTGCCATGGTGGCACCAGGATTCCCCCACCTTGTGGTTGGGATGTTTGGAGAAATGTTTTATACCAGAGTCTTTGGCAACTCAGAAAATTTATACACCTATCCAAATTCTTATCACCTGGTGGGAAGAAAAAGAAAAGATAAGATTACAACTTTGATACCTCTAATGCTATGTTTCGTTGAAATGCAAATTGAAGAAAAAGAAAAGTAA 681 0.4288 MAFDHYISQEWKTIPDSISVTENFDGCFDCNICLDFAHEPVVTLCGHLYCWPCIYKWLHVQSASLAPDEHPQCPVCKDDISHTTMVPLYGRGQAIAHSDRDRKASYRGIFIPPRPPAMGAQSLVSTSSQSDQQLPYRNPYQNPQVEDDDTSSQMLNPSAMVAPGFPHLVVGMFGEMFYTRVFGNSENLYTYPNSYHLVGRKRKDKITTLIPLMLCFVEMQIEEKEK 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr286g00007 226 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 107 IPR013083 -
Mupr286g00007 226 ProSiteProfiles Zinc finger RING-type profile. 30 77 IPR001841 -
Mupr286g00007 226 MobiDBLite consensus disorder prediction 120 151 - -
Mupr286g00007 226 SUPERFAMILY RING/U-box 22 90 - -
Mupr286g00007 226 ProSitePatterns Zinc finger RING-type signature. 45 54 IPR017907 -
Mupr286g00007 226 MobiDBLite consensus disorder prediction 117 151 - -
Mupr286g00007 226 CDD RING-HC_AtRMA-like 28 77 - -
Mupr286g00007 226 SMART ring_2 30 76 IPR001841 -
Mupr286g00007 226 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 8 196 IPR045103 GO:0005783|GO:0006511|GO:0061630
Mupr286g00007 226 Pfam Zinc finger, C3HC4 type (RING finger) 30 76 IPR018957 GO:0046872
Mupr286g00007 226 FunFam E3 ubiquitin-protein ligase RMA1H1 isoform A 6 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr286g00007 Mupr-Chr286 56774 58159 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr286g00007 23 202 C3H Transcription Factor Family AT4G27470 41.711 2.88e-44 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr286g00007 K10666 - gmx:100779793 359.762