Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr2841g00009 ATGGAAGATCATCCACCCGGGTTTCGTTTCTTCCCAACCGAACAAGAGCTAGTTGGCTTCTATCTACACAAGAAGCTAGAAGGCCAGAAAAATTATGCCATAGCCATAGACAGAGTTATCCCAGTTATTGACATCAATGCCTTTGAGCCGTGGAACCTTCCAACACTTGCTGGGGAGCTTTGTCGTGGGGACACGGAGCAATGGTTTTTCTTTTCGCCCGGTCAAGAGAGAGAAGCCAGGGGAGGGAGACCTAGCAGAACCACAAATTGTGGCTATTGGAAGGCCACGGGTTCCCCTGGCTATGTTTACTCTTCTGACAACAAAGTCATTGGGGTCAAGAAATCCATGGTATTCTACAAAGGAAAAGCCCCTATGGGAAGGAAAACCAAATGGAAGATGAATGAGTACAGAGCCATCTATGTCCCTAACCAATCCACCCCTCAGTTGAGATGGGAATTCAGCTTGTGTCGGGTATATGTGATATCGGGAAGCTTTCGAGCATTTGATCGACGGCCATTAGAGGGGGAGGGAGTAGACAAACTTCAAAGGTGGATGGATCGAGTTCATATGAAATTTCCCACTTCGGGGGATTCCATGGTTCTCAGCTGCCAGAGGCTGGAGACTCAAGTAGCACAAATTGGAATAACTTCTTCGCCGATGGCGATCTTCTACGCTTTGGTGGCCAGAGGCACGGTGGTGCTGGCGGAGTTCAGCGCCGTTACCGGCAACACCGGCGCCGTGTCCCGCCGCATACTCGAGAAGCTTCCGGCGGAGTCCGACTCCAGACTCTGCTTCTCTCAGGATCGCTACATCTTTCACATACTCCGATCCGATGGCATCACCTACGTCTGTATGGCCAACGACACTTTCGGAAGGAGAATCCCTTTCTCGTACTTGGAAGATATCCAAATGAGGTTTATGAAGAACTACAGTAGAGTTGCTAATTATGCACCAGCTTATGCAATGAATGATGAATTTTCAAGGGTTTTGCATCAGCAAATGGAATTTTTTTCTAGTAATCCTAGTGCCGATACCCTCAGCCGTGTGAGGGGTGAAATACGCACTATCATGGTGGACAATATCGAGAAAATATTGGAGAGAGGTGACCGGATTGAGCTTCTTGTTGATAAGACAGCAACAATGCAAGACAGTGCATTTCACTTTAGGAAACAGTCAAAGCGCCTCCGAAGAGCTCTTTGGATGAAAAATTTTAAACTCCTGTTGGTAAAAAACGAGGTACTGTCGGAGTGGCCTTATGCAGTGGCGGATTCTGGTGAGTGA 1281 0.4785 MEDHPPGFRFFPTEQELVGFYLHKKLEGQKNYAIAIDRVIPVIDINAFEPWNLPTLAGELCRGDTEQWFFFSPGQEREARGGRPSRTTNCGYWKATGSPGYVYSSDNKVIGVKKSMVFYKGKAPMGRKTKWKMNEYRAIYVPNQSTPQLRWEFSLCRVYVISGSFRAFDRRPLEGEGVDKLQRWMDRVHMKFPTSGDSMVLSCQRLETQVAQIGITSSPMAIFYALVARGTVVLAEFSAVTGNTGAVSRRILEKLPAESDSRLCFSQDRYIFHILRSDGITYVCMANDTFGRRIPFSYLEDIQMRFMKNYSRVANYAPAYAMNDEFSRVLHQQMEFFSSNPSADTLSRVRGEIRTIMVDNIEKILERGDRIELLVDKTATMQDSAFHFRKQSKRLRRALWMKNFKLLLVKNEVLSEWPYAVADSGE 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr2841g00009 426 SMART Longin_2 247 329 IPR010908 -
Mupr2841g00009 426 CDD Longin 223 337 IPR010908 -
Mupr2841g00009 426 ProSiteProfiles Longin domain profile. 226 330 IPR010908 -
Mupr2841g00009 426 ProSitePatterns Synaptobrevin signature. 360 379 IPR001388 GO:0016020|GO:0016192
Mupr2841g00009 426 Gene3D NAC domain 13 164 IPR036093 GO:0003677|GO:0006355
Mupr2841g00009 426 Pfam Regulated-SNARE-like domain 249 327 IPR010908 -
Mupr2841g00009 426 FunFam Vesicle-associated membrane protein 714 220 343 - -
Mupr2841g00009 426 ProSiteProfiles NAC domain profile. 4 161 IPR003441 GO:0003677|GO:0006355
Mupr2841g00009 426 SUPERFAMILY NAC domain 3 159 IPR036093 GO:0003677|GO:0006355
Mupr2841g00009 426 ProSiteProfiles v-SNARE coiled-coil homology domain profile. 342 402 IPR042855 -
Mupr2841g00009 426 PANTHER SNARE PROTEINS 220 409 - -
Mupr2841g00009 426 FunFam Vesicle-associated membrane protein 7 343 415 - -
Mupr2841g00009 426 CDD R-SNARE 344 400 - -
Mupr2841g00009 426 Gene3D - 342 406 - -
Mupr2841g00009 426 Pfam No apical meristem (NAM) protein 5 137 IPR003441 GO:0003677|GO:0006355
Mupr2841g00009 426 Pfam Synaptobrevin 352 408 IPR042855 -
Mupr2841g00009 426 SUPERFAMILY SNARE fusion complex 345 404 - -
Mupr2841g00009 426 SUPERFAMILY SNARE-like 222 337 IPR011012 -
Mupr2841g00009 426 Gene3D Longin domain 209 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr2841g00009 Mupr-Chr2841 76517 84534 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr2841g00009 220 424 Miscellaneous Gene Families AT5G22360 79.426 4.39e-117 339
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Mupr2841g00009 NAM 2.8e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr2841g00009 K08515 - gmx:100780787 362.459