Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr2819g00007 ATGGCACTAAACAAGAACCACTCCTACAGCTACAAGCTTGGTTATGAAGCTCTCCCACCCATCAAAACCGAGGCTGGAACACTCCAACACGCACCACAACCTGGTTCCTCAGACTATGCTTTTCCCATATTTGTGATCGTTGTGCTCAGCATATTGGCCACTGTTTTGTTGCTTCTAAGCTACTTCACTTTTCTAACCAAATACTGCTCAAACTGGCGTCAAGTTAACCCTATGAGATGGGTTTCCATCCTCCGAGCTCGACACGATGAGGACCCCTTCATAGCATTCTCTCCTGCCATGTGGAACCGAGGGCTTGATGAGTCTGTGATCAGAGAAATCCCAACTTTTCAGTTCATGAAAGGACAAGAAGGTGAGGACCAAAGTGTGTATGGCTGTGTGGTTTGTTTGACTGAGTTTAAGGAACATGATGTGCTAAAAGTTCTACCTAATTGCAACCATGCTTTTCATTTGGACTGCATTGACATTTGGCTTCAGACCAATTCCAATTGCCCACTTTGCAGATCAAGCATTTCAGGCAACACACACTGTCCATTGGACCACATCATAGCTCCAAGCTCCTCTCCTCAGGATTCTCAGTTGCTCTCCAACATGGGTAGTGATGAAGATTTTGTTGTTATTGAACTTGGGGGAGAACCTGGAGCAGTATTACCACAGGTGCAACAAGAGAGAAATGACTCAAGGGGAAGTTTGGCACATAGTAGAAATTACCACTCTTCAAGAAAGGTGGAGCACTTGAAACCAAGGAAGTGCCACCATGTTTCCATCATGGGAGATGAGTGTATTGATATCAGAAAGAAAGATGAACAGTTTTTCATTCAGCCAATTAGAAGATCTTTCTCGATGGATTCAGCACATGCTAGACAAACTTACTTGGATGCTCAAGTCATTATACAACAAAGTAGGCATCAGAATGAGGCTAGTGCCAGCGAGGATTCTAACAGCAGGGGCCGACGACCATTCTTTCCGTTTTGTTATGGAAAGGCATCCAAAAATGCTGTTCTTCCTTTGGAGAATGATACAGAGCAAATGGACCCGGGCAATGAGAAAGCATAA 1074 0.4432 MALNKNHSYSYKLGYEALPPIKTEAGTLQHAPQPGSSDYAFPIFVIVVLSILATVLLLLSYFTFLTKYCSNWRQVNPMRWVSILRARHDEDPFIAFSPAMWNRGLDESVIREIPTFQFMKGQEGEDQSVYGCVVCLTEFKEHDVLKVLPNCNHAFHLDCIDIWLQTNSNCPLCRSSISGNTHCPLDHIIAPSSSPQDSQLLSNMGSDEDFVVIELGGEPGAVLPQVQQERNDSRGSLAHSRNYHSSRKVEHLKPRKCHHVSIMGDECIDIRKKDEQFFIQPIRRSFSMDSAHARQTYLDAQVIIQQSRHQNEASASEDSNSRGRRPFFPFCYGKASKNAVLPLENDTEQMDPGNEKA 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr2819g00007 357 Pfam Ring finger domain 132 174 IPR001841 -
Mupr2819g00007 357 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 97 180 IPR013083 -
Mupr2819g00007 357 SMART ring_2 132 173 IPR001841 -
Mupr2819g00007 357 CDD RING-H2_EL5-like 132 174 - -
Mupr2819g00007 357 ProSiteProfiles Zinc finger RING-type profile. 132 174 IPR001841 -
Mupr2819g00007 357 FunFam E3 ubiquitin-protein ligase ATL6 96 180 - -
Mupr2819g00007 357 MobiDBLite consensus disorder prediction 227 249 - -
Mupr2819g00007 357 MobiDBLite consensus disorder prediction 227 242 - -
Mupr2819g00007 357 SUPERFAMILY RING/U-box 109 179 - -
Mupr2819g00007 357 PANTHER RING-H2 FINGER PROTEIN ATL16 22 344 IPR044600 GO:0016567|GO:0016740
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr2819g00007 Mupr-Chr2819 30877 32543 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr2819g00007 32 310 C3H Transcription Factor Family AT1G04360 44.625 3.22e-72 228
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr2819g00007 K19041 - gmx:100809883 611.298