Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr2781g00008 ATGGCGTCGAAAAACAAAGCGAGAAAGAAAAGGAGCGATAGCGAAGAAGACGACGACGTATTCTACTACCGATATAGCAGTGGGAACCCAATCGAAACCGAAGCAAATCCGAAAAACAGCAACAAGGGATCCTCATCCTTGGCTCCCTCGAAATCAACGTTGTATGTCTCCAACATCGACTACTCCCTCACCAACTCCGATCTCCACACGCTCTTCTCCACCTTCGGCCGCATCGCGCGCGTCACCGTTCTCAAGGACCGCCACACGCGCCTCAGTCGCGGCGTCGCCTTCATCCAGTTCGTCTCCCGCCACGACGCCCGCGCCGCCGCCGCCCAGATGCACCGCAAGGTCCTCAACGGCCGCACCCTCACCGCCTCCATCGCCGCCGACAACGGCCGCGCTCCCGAGTTCATCCGCAAGCGCGTCTACCGCGACACCGCCCGCTGCTTCGAGTGCGGCGCCGACGGCCACCTCTCCTACGACTGCCCCCGCAACCAGCTCGGTCCCCGCCCCCGCCCCGAGCCCAAGCGCCCCCGCCACGGACCCCACCGCCGCGACGACGGCGATGAATCTGACGGACCCGGACCCGCCGCGGACCGCTTCGAGGACGACAATTGGGCCTCCGTCGTGGACGATGGCGCCGACGAGAGGTTGTTGGCGGGGAACGTTGATGATGCTGTGGCTGTAAAGAAGAAGAAGAAGAAAGCTGGGTACTTCAGTGATGAGAGTGATGAAGATGATTATGATGCCACAATGACAAAGGAAATAGGAGATGGTTTTCTTGCAGCTGTTTCAAAGATTAACCTGGGATTGAGGGCTGAGTGGATTAATTATCCCAGCTCTCATTTCATGGGGTTGGCAAAGATCCTCCATGCAAACTCCGGGCATCTTGAAGGAATCATCCCTCTACCATGGAGATCCTGGCCTTATCCCTTGTTGCAGAACAGGAAACTTACTTCTAACAGCGAGAAACGAGCAAAGTGTCAATCCTCCAATTCCCTCTTCAAGGCTTCTATTCACACTTCAGTAAGTTGTTCTCAAAAACTGAAACACAATGTGATGGACCAAAGAACTGAAGAAAGCAACGACAGAGGTGGGTTGAGTTCAAAGCTAAAGGGAGAGTGGCAAAGGATAGAATGTGTCTTGTCCCCTTGGTTTGAGCCTTTGAGGAGAATACAAGAGGAGAAATTGTGA 1194 0.5528 MASKNKARKKRSDSEEDDDVFYYRYSSGNPIETEANPKNSNKGSSSLAPSKSTLYVSNIDYSLTNSDLHTLFSTFGRIARVTVLKDRHTRLSRGVAFIQFVSRHDARAAAAQMHRKVLNGRTLTASIAADNGRAPEFIRKRVYRDTARCFECGADGHLSYDCPRNQLGPRPRPEPKRPRHGPHRRDDGDESDGPGPAADRFEDDNWASVVDDGADERLLAGNVDDAVAVKKKKKKAGYFSDESDEDDYDATMTKEIGDGFLAAVSKINLGLRAEWINYPSSHFMGLAKILHANSGHLEGIIPLPWRSWPYPLLQNRKLTSNSEKRAKCQSSNSLFKASIHTSVSCSQKLKHNVMDQRTEESNDRGGLSSKLKGEWQRIECVLSPWFEPLRRIQEEKL 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr2781g00008 397 Gene3D - 1 136 IPR012677 -
Mupr2781g00008 397 MobiDBLite consensus disorder prediction 29 48 - -
Mupr2781g00008 397 PANTHER ZINC FINGER CCHC-TYPE AND RNA-BINDING MOTIF-CONTAINING PROTEIN 1 11 247 IPR044598 GO:0000398|GO:0005689
Mupr2781g00008 397 SMART c2hcfinal6 148 164 IPR001878 GO:0003676|GO:0008270
Mupr2781g00008 397 MobiDBLite consensus disorder prediction 28 48 - -
Mupr2781g00008 397 MobiDBLite consensus disorder prediction 161 205 - -
Mupr2781g00008 397 ProSiteProfiles Zinc finger CCHC-type profile. 148 164 IPR001878 GO:0003676|GO:0008270
Mupr2781g00008 397 MobiDBLite consensus disorder prediction 170 205 - -
Mupr2781g00008 397 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 52 130 IPR000504 GO:0003723
Mupr2781g00008 397 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 54 123 IPR000504 GO:0003723
Mupr2781g00008 397 SMART rrm2_1 53 126 IPR003954 GO:0003676
Mupr2781g00008 397 SUPERFAMILY Retrovirus zinc finger-like domains 132 165 IPR036875 GO:0003676|GO:0008270
Mupr2781g00008 397 Gene3D - 139 182 - -
Mupr2781g00008 397 FunFam U11/U12 small nuclear ribonucleoprotein 31 kDa protein 4 136 - -
Mupr2781g00008 397 SMART rrm1_1 53 126 IPR000504 GO:0003723
Mupr2781g00008 397 SUPERFAMILY RNA-binding domain, RBD 30 135 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr2781g00008 Mupr-Chr2781 46486 49304 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr2781g00008 54 128 Eukaryotic Initiation Factors Gene Family AT1G34140 34.667 1.19e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr2781g00008 K13154 - gmx:100814914 337.421