Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr2776g00005 ATGATTTCAAACACTTGCGGCGAAATAAAGAATGCAGAAACGTCATCGTTTCAGAAGTTCAAAGGCGTTGTGCCTCAACAAAACGGGAACTGGGGTGCACAGATATACGCAAACCACCAGAGAATATGGTTGGGGACATTCAAATCGGAGAGAGAGGCTGCCATGGCTTACGACAGCGCCGGCATAAAACTCAGAAGCCGAGAAAGTCACAGAAACTTTCCATGGAACAACCAAACGGTTCAAGAGTCTCAGTTTCAAAGCCATTACAGCGCAGAAACAGTGCTGACAATGATCAGAGACGGAACATATGCCTCAAACTTTGCGACGTTTCTGAGCACTCGTGAAACACAAGGGACTCCGAAACACATAAGTGTGAAGGGAGAGGAAGGGTTTTGTTGCAGCCAACTTTTTCAGAAGGAATTGACGCCGAGTGATGTGGGCAAACTCAACAGGCTTGTAATACCGAAGAAGCATGCAGTTACCTATTTCCCTTACGTTTGTGGCAGCGAAACAGATGGTGGGGTCGGTGCTGACGTGGAGGTTGTCTTTTATGACAAACTCATGCGCCTCTGGAAGTTTCGATACTGCTATTGGAAGAGCAGCCAAAGTTACGTCTTCACCAGAGGTTGGAATCGCTTTGTCAAGGATAAGAAACTAAAGCCTAAAGATGTCATTGCTTTTTTCATGTGTGAGAGAAAAGATGGGGATGGACATGCTTTTGCATTGATCGATGTCATTTATAATTCAGACACCAAGTTAGATCTCAAACAACAACAAGTTTGTTGCAGTGAAGATCAAGAGATGGGTGATGGAAAGGATAATTTGAATGCACAAAAGGGTTTCAGGCTCTTTGGTGTCTCTATCACCTGA 870 0.446 MISNTCGEIKNAETSSFQKFKGVVPQQNGNWGAQIYANHQRIWLGTFKSEREAAMAYDSAGIKLRSRESHRNFPWNNQTVQESQFQSHYSAETVLTMIRDGTYASNFATFLSTRETQGTPKHISVKGEEGFCCSQLFQKELTPSDVGKLNRLVIPKKHAVTYFPYVCGSETDGGVGADVEVVFYDKLMRLWKFRYCYWKSSQSYVFTRGWNRFVKDKKLKPKDVIAFFMCERKDGDGHAFALIDVIYNSDTKLDLKQQQVCCSEDQEMGDGKDNLNAQKGFRLFGVSIT 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr2776g00005 289 CDD AP2 18 76 IPR001471 GO:0003700|GO:0006355
Mupr2776g00005 289 Gene3D AP2/ERF domain 18 75 IPR036955 GO:0003700|GO:0006355
Mupr2776g00005 289 SMART B3_2 137 246 IPR003340 GO:0003677
Mupr2776g00005 289 FunFam AP2 domain-containing protein RAP2.8 18 75 - -
Mupr2776g00005 289 CDD B3_DNA 136 229 IPR003340 GO:0003677
Mupr2776g00005 289 ProSiteProfiles AP2/ERF domain profile. 19 74 IPR001471 GO:0003700|GO:0006355
Mupr2776g00005 289 ProSiteProfiles B3 DNA-binding domain profile. 137 249 IPR003340 GO:0003677
Mupr2776g00005 289 SUPERFAMILY DNA-binding domain 19 76 IPR016177 GO:0003677
Mupr2776g00005 289 Gene3D - 133 256 IPR015300 -
Mupr2776g00005 289 SMART rav1_2 19 80 IPR001471 GO:0003700|GO:0006355
Mupr2776g00005 289 Pfam B3 DNA binding domain 137 233 IPR003340 GO:0003677
Mupr2776g00005 289 SUPERFAMILY DNA-binding pseudobarrel domain 136 232 IPR015300 -
Mupr2776g00005 289 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 18 288 IPR044800 GO:0003700
Mupr2776g00005 289 Pfam AP2 domain 19 65 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr2776g00005 Mupr-Chr2776 46806 47675 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr2776g00005 19 288 RAV Transcription Factor Family AT1G50680 51.456 2.14e-97 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Mupr2776g00005 B3 7e-24 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr2776g00005 K09287 - gmx:102660503 413.305