Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr2776g00003 ATGTGTGTTGTGTTGAAGCCTGAACGGTTAGGGTTTAAAGTCTATTCTGCGTTGCGAATTGGCATGGATCGCAAGAGGGCGAGGCCTGAAGCTGCCTTCAATGTTAATGGCCCCGCCAAGAAATCCAGGCCAGAAACGGACTCCCTTCCAACTGGTTTAGGAAGCAAATTGAAGCCATGCACAAACACCTCTGGGTGTCCATTTGGTGAAGGATGCCATTTCTTGCATTATGTTCCTGGTGGCTTCAACGTTGTCTCTCAGCTGATTAATGTTGGTAGCATTCCTGCTATTCCTCATGGTAGAAATCCTGTTCCACCATCCTTTCCAGATGGATCTTCTCCTCCAGTTGTTAAAACCCGATTGTGCAACAAGTTTAATATGGCTGAAGGTTGCAAGTTTGGTGACAGATGCCACTTTGCCCATGGTGACTGGGAGCTTGGCAGGCCTACGGTCCCATCATATGAAGATCCCCGTGTCTTAGGACAAATGCCAAACAGCAGATTAGGTGGGCGACTTGAGCCTCCACTTCCAGCTTCTGCCAGCTTTGGAGCTTCAGCTACTGCAAAAATTAGTATCAATGCTTCACTAGCTGGAGCTGTCATTGGCAAAAATGGTGTCAACTCTAAGCAAATATGTCGTGTAACAGGATCTAGACTTTCCATAAGGGATCATGACTCGGATCCTAATCTTAGAAACATTGAGCTGGAAGGCAGTTTTGATCAGATCAAACAAGCCAGTGCCATGGTTCACGAACTTATTCTAAATCTTACTTCTGCCTTTGGACCTCCAATCAAAAGCTTTACTACACAGACTTCTTCCCCTTCAGGCAACTTCAAAACTAAGCTGTGTGAAAACTTTGCTAAAGGTTCCTGCACGTTTGGGGATAGGTGTCACTTTGCACATGGAACTGATGAATTACGCAAGTTTGGTATCTGA 936 0.4562 MCVVLKPERLGFKVYSALRIGMDRKRARPEAAFNVNGPAKKSRPETDSLPTGLGSKLKPCTNTSGCPFGEGCHFLHYVPGGFNVVSQLINVGSIPAIPHGRNPVPPSFPDGSSPPVVKTRLCNKFNMAEGCKFGDRCHFAHGDWELGRPTVPSYEDPRVLGQMPNSRLGGRLEPPLPASASFGASATAKISINASLAGAVIGKNGVNSKQICRVTGSRLSIRDHDSDPNLRNIELEGSFDQIKQASAMVHELILNLTSAFGPPIKSFTTQTSSPSGNFKTKLCENFAKGSCTFGDRCHFAHGTDELRKFGI 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr2776g00003 311 CDD KH-I_AtC3H36_like 188 253 - -
Mupr2776g00003 311 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 178 256 IPR036612 GO:0003723
Mupr2776g00003 311 Gene3D - 269 308 - -
Mupr2776g00003 311 Gene3D - 111 148 - -
Mupr2776g00003 311 Gene3D K Homology domain, type 1 182 255 IPR036612 GO:0003723
Mupr2776g00003 311 Pfam KH domain 188 250 IPR004088 GO:0003723
Mupr2776g00003 311 ProSiteProfiles Zinc finger C3H1-type profile. 117 144 IPR000571 GO:0046872
Mupr2776g00003 311 ProSiteProfiles Type-1 KH domain profile. 185 249 - -
Mupr2776g00003 311 SMART c3hfinal6 277 303 IPR000571 GO:0046872
Mupr2776g00003 311 SMART c3hfinal6 54 78 IPR000571 GO:0046872
Mupr2776g00003 311 SMART c3hfinal6 118 143 IPR000571 GO:0046872
Mupr2776g00003 311 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 118 142 IPR000571 GO:0046872
Mupr2776g00003 311 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 278 302 IPR000571 GO:0046872
Mupr2776g00003 311 ProSiteProfiles Zinc finger C3H1-type profile. 277 304 IPR000571 GO:0046872
Mupr2776g00003 311 ProSiteProfiles Zinc finger C3H1-type profile. 54 79 IPR000571 GO:0046872
Mupr2776g00003 311 FunFam Zinc finger CCCH domain-containing protein 111 148 - -
Mupr2776g00003 311 FunFam Zinc finger CCCH domain-containing protein 272 308 - -
Mupr2776g00003 311 PANTHER CCCH ZINC FINGER/TIS11-RELATED 28 165 IPR045877 GO:0003729
Mupr2776g00003 311 SUPERFAMILY CCCH zinc finger 114 147 IPR036855 GO:0046872
Mupr2776g00003 311 SUPERFAMILY CCCH zinc finger 277 308 IPR036855 GO:0046872
Mupr2776g00003 311 Pfam RNA-binding, Nab2-type zinc finger 59 76 - -
Mupr2776g00003 311 SMART kh_6 184 254 IPR004087 GO:0003676
Mupr2776g00003 311 MobiDBLite consensus disorder prediction 34 54 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr2776g00003 Mupr-Chr2776 29996 34499 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mupr2776g00003 KH_1 3.4e-10 CL0007
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr2776g00003 - - gmx:100818781 526.168