Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr2754g00006 ATGGCTGCAACTCCTTCCAAGTCTTTTCGAACTCCCTCCAAACCCAAACTGCGATCCCAATCCAACCCCAAATCTTCGCCCATTGAAACCCCCGTTACTCCACAAACCCTACATCTTCGCAGATCCACACGCGCCAAGTCCCTCCTCTTCGATTCCCCCAACCCTCGTGAAGTTTCACTCACAACTCCGAAGCGGAAGACTCGACGATCCATCGATTATGTCGAGGATTCTGGTGAAGACAAAGTCACCATTTCCGCTACAAATAACGGTTCAGTCATCCAAGCATCAGAGAAGAAGAATGGTAAGCGTTCAATTGAAGTTTGCCTCGTGCCGGCAACGCCGGCTCCATCGGAAAAGAGATCGACGAGAAAGAGGAAGAGGGAGGGCGAGACAAGTGTTGTCACCAGAGCTAAAAGGGGGAAATCTCAGAAACATGGTGCAAAATTGCCCGAGAAGCGTGTGTATTACAAAAAAGTGATTTACGATGGGGGCGAGTTTGAACTGGGGAATGATGTTTACGTTAAGAGAAGAGAAGATGTTTGCTCCGATGACGAAGATCCCGAAGTGGAGGAATGTAGGTTGTGTTTTTCCTCAAGCGACGAGGTCATGATTGAGTGTGACGATTGTTTAGGTGGGTTTCATTTGAAATGCTTGGCACCGCCGAAGGAGGACGTTCCTGAAGGGGATTGGATATGTGGGTTCTGTGAGGCTCGTAAGATGGGTAGGGAAGTCCAGTTTCCAAAGCCTCCTAATGGCAAGAAATTGGTTAGAACTATGAGGGAGAAGCTTCTTTCCAGTGATTTGTGGGCTGCTCGTATTGAAAGTATATGGAAAGAGGTAGATGGCAACTATTGGTGTCGGGTGCGGTGGTATACAATCCCGGAAGAGACTTCAGTTGGAAGGCAACCTCATAACCTGAGAAGGGAGCTATATCGAAGTAATGATTTTGCTGACATTGAGATGGAATCTGTCCTTAGACATTGCTATGTGATGACCCCCAAAGAATATGCTAAAGCAGGCAATGAGGGAGATGATGTTTTCTTATGTGAATATGAATATGACATCCATTGGCACAGTTTCAAACGTCTTGCTGATATTGACAGTGAAAGAGAGAATGGTGAAGAGACTGATAGTGATGAAGACTGGAATCTTGACAAGGAATCAGACTCTGATACAGATGAAGATGTTGAATATGAAGAAGAAAATATTAAAAATGCACAATCTCATCCATTAACAAGCCATCACTTAGCTGCAAAAATAAATGTGCACATGATACAGAATATGCACAAGGGACGGTTCTTTGGACTTCAGAAGATAGGCACAAAAAGAATTCCACAGCATGTAAGGTCTCACAAACAGACTGATCTTGAGAGAGCAAAGGCTACACTGTTGTTAGCGTCGCTGCCTAAATCTTTACCTTGTAGAAATAAGTATGTTGAAATTTGA 1446 0.4454 MAATPSKSFRTPSKPKLRSQSNPKSSPIETPVTPQTLHLRRSTRAKSLLFDSPNPREVSLTTPKRKTRRSIDYVEDSGEDKVTISATNNGSVIQASEKKNGKRSIEVCLVPATPAPSEKRSTRKRKREGETSVVTRAKRGKSQKHGAKLPEKRVYYKKVIYDGGEFELGNDVYVKRREDVCSDDEDPEVEECRLCFSSSDEVMIECDDCLGGFHLKCLAPPKEDVPEGDWICGFCEARKMGREVQFPKPPNGKKLVRTMREKLLSSDLWAARIESIWKEVDGNYWCRVRWYTIPEETSVGRQPHNLRRELYRSNDFADIEMESVLRHCYVMTPKEYAKAGNEGDDVFLCEYEYDIHWHSFKRLADIDSERENGEETDSDEDWNLDKESDSDTDEDVEYEEENIKNAQSHPLTSHHLAAKINVHMIQNMHKGRFFGLQKIGTKRIPQHVRSHKQTDLERAKATLLLASLPKSLPCRNKYVEI 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr2754g00006 481 SMART BAH_4 223 364 IPR001025 GO:0003682
Mupr2754g00006 481 MobiDBLite consensus disorder prediction 118 137 - -
Mupr2754g00006 481 MobiDBLite consensus disorder prediction 1 42 - -
Mupr2754g00006 481 Gene3D - 255 463 IPR043151 -
Mupr2754g00006 481 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 105 246 IPR013083 -
Mupr2754g00006 481 MobiDBLite consensus disorder prediction 368 397 - -
Mupr2754g00006 481 PANTHER CELL DIVISION CONTROL PROTEIN 6-RELATED 296 477 - -
Mupr2754g00006 481 ProSitePatterns Zinc finger PHD-type signature. 192 235 IPR019786 -
Mupr2754g00006 481 MobiDBLite consensus disorder prediction 1 78 - -
Mupr2754g00006 481 ProSiteProfiles BAH domain profile. 247 364 IPR001025 GO:0003682
Mupr2754g00006 481 MobiDBLite consensus disorder prediction 370 397 - -
Mupr2754g00006 481 Pfam PHD-finger 192 237 IPR019787 -
Mupr2754g00006 481 Pfam BAH domain 271 361 IPR001025 GO:0003682
Mupr2754g00006 481 MobiDBLite consensus disorder prediction 110 147 - -
Mupr2754g00006 481 SUPERFAMILY FYVE/PHD zinc finger 179 242 IPR011011 -
Mupr2754g00006 481 ProSiteProfiles Zinc finger PHD-type profile. 189 238 IPR019787 -
Mupr2754g00006 481 FunFam Origin recognition complex subunit 1 255 455 - -
Mupr2754g00006 481 SMART PHD_3 191 236 IPR001965 -
Mupr2754g00006 481 MobiDBLite consensus disorder prediction 61 78 - -
Mupr2754g00006 481 FunFam Origin recognition complex subunit 1 187 254 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr2754g00006 Mupr-Chr2754 46577 49105 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr2754g00006 1 480 Core DNA Replication Machinery Family AT4G12620 48.875 2.53e-134 405
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Mupr2754g00006 BAH 4.1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr2754g00006 K02603 - gmx:100798547 791.571