Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr2754g00004 ATGGCGACGACGACGTCGCAGGGGTATCACCAACCTTCGAGCATCGAGGAAGTCCGAACCCTATGGATTGGGGATTTGCAGTATTGGGTGGACGAAACGTACCTGAGCCACTGCTTCGCTCACACGGGCGAGGTTGTTTCGATAAAAATAATCCGCAACAAGATGACGGGCCAGCCCGAGGGCTACGGATTCGTGGAGTTCGTTTCGCACGGTGCAGCAGAGAGGGTCCTCCAGAGTTACAACGGCACGCAGATGCCTGGGACCGAACAAACATTCAGGTTGAATTGGGCCTCATTTGGCATAGGTGAGCGCCGGCCCGATGCGGGCCCAGAACACTCGATCTTCGTGGGCGATCTGGCCCCCGACGTAACTGATTATCTGCTTCAGGAGACCTTTCGGGCCCATTACCCTTCCGTTCGCGGCGCCAAGGTTGTGACCGACCCCAACACGGGTCGCTCCAAGGGTTATGGCTTCGTTAAATTCTCTGATGAGAATGAACGGAACCGCGCCATGACGGAAATGAACGGTGTTTATTGCTCCACTAGGCCCATGCGGATTAGCGCTGCTACGCCCAAGAAGACCACCACTGCTTACACTGCACCGAAACCGATATATCCAGTTCCGGCGTACTCTGCTCCTGTTCAAGTTCAACCACCAGAGTATGATATAAATAATACTGCTATTTTTGTTGGTAATTTGGATCTTAATGTGTCAGAGGAGGAGCTGAAGCAAAACTTTCTGCAATTTGGAGAAATTTCCTCTGTCAAAATTCAAGCTGGCAAAGGATGTGGTTTTGTTCAATTTGGAACTAGAACATCTGCTGAAGAAGCCATTCAGAAGATGCAGGGAAAGATGATAGGCCAACAAGTCGTTCGAATTTCTTGGGGTAGGACTCTAACAGCTAGACAGGACTTACCTGGTGGCTGGGGGCCACAGATGGACCCAAGTCAATGGAGTGCCTACTATGGGTATGGACAGGGTTATGAAGCCTATGCATATGGGGCTGCTCAAGATCCTTCACTGTATGCATATGGTGCATATGCTGGCTATGGACAATACCCCCAACAGGTTGAAGGTGGTCAAGACCTATCGGGTATGTCTGTGCCTACCATGGAACAAAGGGAGGAATTGTATGATCCCCTAGCAATGCCTGATGTTGATAAGTTAAATGCTGCATACGTCTCAGTACATGGAAGTGCCATTTTAGGGCGGTCACTCTGGCAAAAAACCTGTTCATCATCCTTACAGCAAGCTTAG 1257 0.5028 MATTTSQGYHQPSSIEEVRTLWIGDLQYWVDETYLSHCFAHTGEVVSIKIIRNKMTGQPEGYGFVEFVSHGAAERVLQSYNGTQMPGTEQTFRLNWASFGIGERRPDAGPEHSIFVGDLAPDVTDYLLQETFRAHYPSVRGAKVVTDPNTGRSKGYGFVKFSDENERNRAMTEMNGVYCSTRPMRISAATPKKTTTAYTAPKPIYPVPAYSAPVQVQPPEYDINNTAIFVGNLDLNVSEEELKQNFLQFGEISSVKIQAGKGCGFVQFGTRTSAEEAIQKMQGKMIGQQVVRISWGRTLTARQDLPGGWGPQMDPSQWSAYYGYGQGYEAYAYGAAQDPSLYAYGAYAGYGQYPQQVEGGQDLSGMSVPTMEQREELYDPLAMPDVDKLNAAYVSVHGSAILGRSLWQKTCSSSLQQA 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr2754g00004 418 CDD RRM2_SECp43_like 111 190 - -
Mupr2754g00004 418 FunFam Polyadenylate-binding protein RBP47B 100 201 - -
Mupr2754g00004 418 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 191 IPR000504 GO:0003723
Mupr2754g00004 418 SUPERFAMILY RNA-binding domain, RBD 203 327 IPR035979 GO:0003676
Mupr2754g00004 418 SMART rrm1_1 113 187 IPR000504 GO:0003723
Mupr2754g00004 418 SMART rrm1_1 227 294 IPR000504 GO:0003723
Mupr2754g00004 418 SMART rrm1_1 20 95 IPR000504 GO:0003723
Mupr2754g00004 418 SUPERFAMILY RNA-binding domain, RBD 18 193 IPR035979 GO:0003676
Mupr2754g00004 418 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 228 291 IPR000504 GO:0003723
Mupr2754g00004 418 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 179 IPR000504 GO:0003723
Mupr2754g00004 418 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 21 89 IPR000504 GO:0003723
Mupr2754g00004 418 Gene3D - 102 200 IPR012677 -
Mupr2754g00004 418 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 226 298 IPR000504 GO:0003723
Mupr2754g00004 418 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 19 99 IPR000504 GO:0003723
Mupr2754g00004 418 Gene3D - 212 303 IPR012677 -
Mupr2754g00004 418 FunFam polyadenylate-binding protein RBP45 209 305 - -
Mupr2754g00004 418 FunFam Polyadenylate-binding protein RBP47B 18 98 - -
Mupr2754g00004 418 Gene3D - 18 98 IPR012677 -
Mupr2754g00004 418 CDD RRM1_SECp43_like 20 100 - -
Mupr2754g00004 418 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 12 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr2754g00004 Mupr-Chr2754 39233 41736 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr2754g00004 18 325 Eukaryotic Initiation Factors Gene Family AT1G49760 25.000 1.51e-21 95.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr2754g00004 - - gmx:100799421 726.087