Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr2738g00002 TCTTGCCTTTATGATCTTTTTTGTACTGAGACACCAAGTTTGAATACTCAAAGTCTAAGAGAACGATGGTTGTTTTCTGGTCCACATAAAAGGCTAGACAATTTGATGCGTCAAGCTGGAAATAAGTATTGTGCTGATTGTGGATCATTAGATCCAAAATGGGTGTCTTCAAGTATTGGAGTATTTATTTGCATCAAATGCTCTGGTATACATAGAAGCCTAGGTGTCCATATATCAAAGGTTCTATCACTAAAGCTAGATCAATGGACAGATGAACAAGTTGATGCATTGGTGAAGTTGGGAGGAAATACAGTAATCAATAATAAGTATGAAGCTTTCATTCCAAGTAACATAAAAAAGCCAAGACCAAATTCTTCCATTGATGAGCGCTCTGATTTTATTAGGAGAAAATATGAGTTTATGCAGTTTTTAGATCCCGAGGAGAATTTGTCTTGTCCCTTTGTACCATCTCATTCAAGAAACTCATCATACTTCCAGAACAATTCCACATATGACAAAAAAAATTATGATAAACAACCAACAAAAAATCGTATTGGAAATGCACTTCGAAATAGTTGGACGAGAAAAGATTCTGAGCGTAAGAGTTCAAAGAAGAGCAACTCATTGGCAGGTATGATTGAATTTGTTGGATTGATCAAGGTCAATGTGGTTAAAGGCACTAACCTAGCTATTCGTGATGTAATGACTAGTGATCCTTATGTCATCATATCTCTTGGTCACCAATCAGTGAAGACACGTGTCATAAAGAACAATTTAAACCCAATTTGGAATGAAAGGCTAATGTTATCAATTCCTGATCACATTCCTCCTCTTAAA 837 0.3572 SCLYDLFCTETPSLNTQSLRERWLFSGPHKRLDNLMRQAGNKYCADCGSLDPKWVSSSIGVFICIKCSGIHRSLGVHISKVLSLKLDQWTDEQVDALVKLGGNTVINNKYEAFIPSNIKKPRPNSSIDERSDFIRRKYEFMQFLDPEENLSCPFVPSHSRNSSYFQNNSTYDKKNYDKQPTKNRIGNALRNSWTRKDSERKSSKKSNSLAGMIEFVGLIKVNVVKGTNLAIRDVMTSDPYVIISLGHQSVKTRVIKNNLNPIWNERLMLSIPDHIPPLK 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr2738g00002 279 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 215 274 IPR035892 -
Mupr2738g00002 279 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 26 279 IPR044518 GO:0005096|GO:0005543
Mupr2738g00002 279 Pfam Putative GTPase activating protein for Arf 30 145 IPR001164 GO:0005096
Mupr2738g00002 279 SMART arf_gap_3 30 151 IPR001164 GO:0005096
Mupr2738g00002 279 MobiDBLite consensus disorder prediction 165 188 - -
Mupr2738g00002 279 Pfam C2 domain 218 273 IPR000008 -
Mupr2738g00002 279 CDD ArfGap 32 138 - -
Mupr2738g00002 279 SUPERFAMILY ArfGap/RecO-like zinc finger 30 145 IPR037278 -
Mupr2738g00002 279 FunFam stromal membrane-associated protein 1 isoform X1 17 149 - -
Mupr2738g00002 279 ProSiteProfiles ARF GTPase-activating proteins domain profile. 29 151 IPR001164 GO:0005096
Mupr2738g00002 279 ProSiteProfiles C2 domain profile. 196 279 IPR000008 -
Mupr2738g00002 279 PRINTS HIV Rev interacting protein signature 60 77 IPR001164 GO:0005096
Mupr2738g00002 279 PRINTS HIV Rev interacting protein signature 41 60 IPR001164 GO:0005096
Mupr2738g00002 279 PRINTS HIV Rev interacting protein signature 81 102 IPR001164 GO:0005096
Mupr2738g00002 279 Gene3D Arf GTPase activating protein 17 151 IPR038508 -
Mupr2738g00002 279 Gene3D C2 domain 198 278 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr2738g00002 Mupr-Chr2738 29430 33878 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr2738g00002 1 248 C2H2 Transcription Factor Family AT3G07940 58.730 1.61e-102 298
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr2738g00002 K12486 - gmx:100799376 473.011