Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr2726g00005 ATGGCAAATTTCACCCCCTTCTCTTCTTCTTCGTCACTGTCACACATTCCACCCATTTCAGCTCCATCTTCTTCTGCACCTTTCGACGACTCTTCAGATGACTCCTGCAGTATATGCCTGGAGCCCTTCACTCTCCATGACCCATCCACTGTTACCTGTTGCAAACATGAATATCATCTGCATTGCATTCTAGAATGGTCACAAAGAAGTAAAGAGTGCCCAATATGTTGGCAATCACTTGCTTTGAAAGACCCTGCCAGCCAAGAGCTTCTAGCGGCAGTGGAAGTTGAAAGACGCATAAGATCAAGAAACACGACTAACTCTCGTGTCCCACTTGAACATCTTAATGATAGCCATGTAAGATATCTAAGAATTGATCTTTTTCGGAACTGTTTTGTTGTGTTAATATGTATTGGTATTAGTTTCCTTGATACAAGTATCATACTCCCATTCAATGACCAGAGGCAAATTATTCCATTGCAGGATGATTCTTGCTCAGATGACTCTGATTTTGATGACCAAATCATGAGGCGCTTAGTTGCTGCAGCAAATAGAGCTCGTTTTGTTCAGAGACAGGAAAGGAAGAGATCACCTGATTCTGGTCCATCAGAGGTTCTAGGTTCCAACTCTTCCATGCATGTATTAGCAGTGCAACCAAGAGTTGCAACTTCACCCTCTACTGTTAACATTCAACCTTCAGCATTAAGTACTACTCCCGAGATCAATGTCCCTCACAGATCCAGAGTTCTCTATAGCCAGTCACCACCCGAGAGTGCAAGGAATCCAAACACTACTAAAATGTTATCCTTCCCTGATTCCATCAAATCCAAATTCTCTGCTGCTTCAGCCAGATATAAGGAATCAATTTCCAAAGGCACGCGTGGCCTTAAAGAGAAGTTACTTGCTCATAATGTCTCGGTAAAAGAGCTGAGTAAAGGTGTTCAGCGCGAGATGAATGCAGGCATCACCGGAGTTGCAAGGATGATTGAACGCCTCGATCTTTCCTCGAAACGGTCCAGTTCTCCTCTCATTCCTGTCCATAGTGGGGGAACTTCAGACCTCCCTTCTTCAGGGAAGTCTGTTGATGAGAATGGCATTGGGGGTTCTCCTAGTAAAGAGATTGGAGGTGCAGTTCATGATGTGCCCTCACTTGTTACTAACATGCAATCCTTTCAAATGAAAACTCCTCCATTTGTTCAGGTTACTCCTATCTATCAAACTCCCTAG 1227 0.4377 MANFTPFSSSSSLSHIPPISAPSSSAPFDDSSDDSCSICLEPFTLHDPSTVTCCKHEYHLHCILEWSQRSKECPICWQSLALKDPASQELLAAVEVERRIRSRNTTNSRVPLEHLNDSHVRYLRIDLFRNCFVVLICIGISFLDTSIILPFNDQRQIIPLQDDSCSDDSDFDDQIMRRLVAAANRARFVQRQERKRSPDSGPSEVLGSNSSMHVLAVQPRVATSPSTVNIQPSALSTTPEINVPHRSRVLYSQSPPESARNPNTTKMLSFPDSIKSKFSAASARYKESISKGTRGLKEKLLAHNVSVKELSKGVQREMNAGITGVARMIERLDLSSKRSSSPLIPVHSGGTSDLPSSGKSVDENGIGGSPSKEIGGAVHDVPSLVTNMQSFQMKTPPFVQVTPIYQTP 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr2726g00005 408 ProSiteProfiles Zinc finger RING-type profile. 36 76 IPR001841 -
Mupr2726g00005 408 MobiDBLite consensus disorder prediction 339 364 - -
Mupr2726g00005 408 MobiDBLite consensus disorder prediction 339 370 - -
Mupr2726g00005 408 MobiDBLite consensus disorder prediction 188 209 - -
Mupr2726g00005 408 Pfam Ring finger domain 34 76 IPR001841 -
Mupr2726g00005 408 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 25 85 - -
Mupr2726g00005 408 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 23 108 IPR013083 -
Mupr2726g00005 408 FunFam E3 ubiquitin-protein ligase RHF1A 21 88 - -
Mupr2726g00005 408 SUPERFAMILY RING/U-box 28 83 - -
Mupr2726g00005 408 SMART ring_2 36 76 IPR001841 -
Mupr2726g00005 408 MobiDBLite consensus disorder prediction 251 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr2726g00005 Mupr-Chr2726 24865 27158 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr2726g00005 30 84 C3H Transcription Factor Family AT4G00335 43.636 8.84e-12 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr2726g00005 K19043 - gmx:100805449 456.447