Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr2692g00003 ATGTTGCGGCCTCTATTATATAAGTTGTCTTTTACGCCTGTGCATGTGGCTTTCTTTTTATCCTTTATATCTGCAATAGAAAGAGAGGCAGTAAATAGGATAGGAAGCAGAGATCGAGAGAGAGGAAGCATGGGAAGAGGAAAGGTAGTCCTGGAGAGAATACAAAACAAGATTAATCGCCAAGTAACCTTCTCAAAGCGCAGGAATGGTTTGCTGAAGAAAGCCTTCGAACTATCTGTGCTATGCGATGCTGAAATCGCCCTTATCATCTTCTCCAGCCGTGGAAAGCTTTTTCAGTACAGTAGCACTGACATTAACAGAATCATTGAGAGGTATCGTCAATGCTGCTTCGACATATCTCAGACTAACAGCGAAGCTGAACATCAACAGCAGCAGTGCTTATACCAGGAGCTATTGATATTAAGAGTGAAGCATGAATCACTCCAGCGAACACAAAGGAATCTTATGGGAGAAGAACTTGAGCCCCTTAGCATAAAAGAATTGCAGAATTTAGAGAAACAACTGGATAGAACGCTTGCACAAGCTCGGAAGCACCTAAAGCAGAAGCTGATGACACGAATTGACGAATTACAGGAAAAGGTGCACAACCTGGAGCAGTTTAACAAACATTTGGAATCTAAGGAAAGAGGTCAATGCACCCAGATTTGTGAAGGTTCTACTAATAACCGTATTTGGTTGCACGATGCACAAGTCACTCAGTTTGAATCTGGAACAACAGGTTCGTTTCGGCTTCAGCAAACTACTGCTTCAAATGGAAAATAG 783 0.4215 MLRPLLYKLSFTPVHVAFFLSFISAIEREAVNRIGSRDRERGSMGRGKVVLERIQNKINRQVTFSKRRNGLLKKAFELSVLCDAEIALIIFSSRGKLFQYSSTDINRIIERYRQCCFDISQTNSEAEHQQQQCLYQELLILRVKHESLQRTQRNLMGEELEPLSIKELQNLEKQLDRTLAQARKHLKQKLMTRIDELQEKVHNLEQFNKHLESKERGQCTQICEGSTNNRIWLHDAQVTQFESGTTGSFRLQQTTASNGK 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr2692g00003 260 Coils Coil 165 214 - -
Mupr2692g00003 260 SUPERFAMILY SRF-like 45 116 IPR036879 GO:0003677|GO:0046983
Mupr2692g00003 260 Gene3D - 56 136 IPR036879 GO:0003677|GO:0046983
Mupr2692g00003 260 PANTHER SERUM RESPONSE FACTOR HOMOLOG 46 206 - -
Mupr2692g00003 260 ProSiteProfiles K-box domain profile. 131 225 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mupr2692g00003 260 ProSiteProfiles MADS-box domain profile. 44 104 IPR002100 GO:0003677|GO:0046983
Mupr2692g00003 260 SMART madsneu2 44 103 IPR002100 GO:0003677|GO:0046983
Mupr2692g00003 260 ProSitePatterns MADS-box domain signature. 46 100 IPR002100 GO:0003677|GO:0046983
Mupr2692g00003 260 PRINTS MADS domain signature 66 81 IPR002100 GO:0003677|GO:0046983
Mupr2692g00003 260 PRINTS MADS domain signature 81 102 IPR002100 GO:0003677|GO:0046983
Mupr2692g00003 260 PRINTS MADS domain signature 46 66 IPR002100 GO:0003677|GO:0046983
Mupr2692g00003 260 Pfam K-box region 126 214 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mupr2692g00003 260 FunFam MADS-box transcription factor MADS-MC 56 130 - -
Mupr2692g00003 260 CDD MADS_MEF2_like 45 115 IPR033896 GO:0000977|GO:0045944
Mupr2692g00003 260 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 53 100 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr2692g00003 Mupr-Chr2692 31442 40196 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr2692g00003 44 214 MADS-box Gene Family AT2G45650 53.801 1.87e-54 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Mupr2692g00003 K-box 1.3e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr2692g00003 K09264 - gmx:100778860 362.459