Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr2673g00007 ATGATGCATTTGCAAGGCAAGGAGGGGACACGTGGCCAAGGTTGCTGTCAGCGTTGGAACGATGTGGTCCCCACAGAGAGGCCACGCGTTTCGCGGATTTGTGCTGCTCAAGTGCGTGTCACGTGGGCCACATCTTTCTTTGTTGGGTTCCCCTCAAAGGCCCCGATAACCTCACCCGCACCCCTCACTCTCCACTCCCAAACCCGCTGTCCCCGGTTACTCTCACCCTCCCTCGCCCCACAACGCACCCTCTCGCGCCACCGGAACACCCGGTTTCCCCGTCCACGTGTCCAGTTGGAGCCCACAGAATCTGAGGACCCAAAATCTAGGGTTTTCTATTCTTCTCTGGATGGGTCGGAGAATTTGGCGACTGTTTGGGTTGTGGGATCTGAAGACATGCAGTCTAAGTCTGAAACTGCAAATCGACTGAGGTCAGATCCTCATTCTTTTCAACCTGGCAATGTTTATTCTGAGCCTTGGTGGCGTGGTATTGGGTACAATCCCTTGGCCCAAACAATGGCTGGGGCAAATGCATCCAATTCGTCGTCTCTTGAATGCCCTAATGGTGATTCTGAATCCAATGAAGAGGGACAGTCTTTGTCCAATAGTGGGATGAATGAGGAAGATGATGACGCCACAAAAGATTCGCAGCCTGCTGCTCCTAATGAACCAGGCAATTATGGGCAAGAACAACAAGGGATGCAGCATGCTGCATCATCTGCACCATCCATGCGTGAAGAATGCCTTACTCAGACACCGCAGCTGGAACTTGTTGGCCATTCAATTGCATGTACGACAAATCCTTATCAGGATCCTTATTATGGGGGCATGATGGCAGCTTATGGTCACCAACAATTGGGATATGCTCCTTTTATAGGAATGCCTCATGCCAGAATGCCTTTGCCCCTTGAGATGGCTCAAGAGCCCGTTTATGTGAATGCCAAACAGTACCAAGGAATTCTGAGGCGAAGACAGGCTCGTGCTAAAGCAGAGCTTGAAAGGAAGCTCATAAAGTCTAGAAAGCCATATCTTCACGAGTCACGGCATCAGCATGCTATGAGAAGGGCAAGGGGTACCGGAGGACGATTTGCAAAGAAAACTGATGCTGAGGGCTCAAACCACTCAGGCAAGGAAAAGGATAATGGTACTGATTCTGTCCTATCATCACAATCAATTAGTTCATCTGGTTCTGAACCTTTGCATTCTGACTCTGCCGAAACATGGAACTCTCCTAACATGCAACAACAAGATGCAAAAGTGCACAACAGGTTCGAAGCACCAAGTTACCAAAATGGCAGTGGCTCCTATCATAACCACAATGGTTTGCAATCTTCAGTGTATCATTCTTCCTCAGGTGAAAGAGTGGATGAAGGGGACTGTCCAGTGGTTAGTCAACTCCAACCAACATCAATGGGATGGTCAGAAAAGAAGACTTTGGAGAAACAAACTCTTGATGTACAACCAACACTCCATTTCATTGGTTCTTAA 1488 0.4879 MMHLQGKEGTRGQGCCQRWNDVVPTERPRVSRICAAQVRVTWATSFFVGFPSKAPITSPAPLTLHSQTRCPRLLSPSLAPQRTLSRHRNTRFPRPRVQLEPTESEDPKSRVFYSSLDGSENLATVWVVGSEDMQSKSETANRLRSDPHSFQPGNVYSEPWWRGIGYNPLAQTMAGANASNSSSLECPNGDSESNEEGQSLSNSGMNEEDDDATKDSQPAAPNEPGNYGQEQQGMQHAASSAPSMREECLTQTPQLELVGHSIACTTNPYQDPYYGGMMAAYGHQQLGYAPFIGMPHARMPLPLEMAQEPVYVNAKQYQGILRRRQARAKAELERKLIKSRKPYLHESRHQHAMRRARGTGGRFAKKTDAEGSNHSGKEKDNGTDSVLSSQSISSSGSEPLHSDSAETWNSPNMQQQDAKVHNRFEAPSYQNGSGSYHNHNGLQSSVYHSSSGERVDEGDCPVVSQLQPTSMGWSEKKTLEKQTLDVQPTLHFIGS 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr2673g00007 495 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 308 363 IPR001289 GO:0003700|GO:0006355
Mupr2673g00007 495 MobiDBLite consensus disorder prediction 361 381 - -
Mupr2673g00007 495 MobiDBLite consensus disorder prediction 177 249 - -
Mupr2673g00007 495 SMART cbf3 305 366 IPR001289 GO:0003700|GO:0006355
Mupr2673g00007 495 MobiDBLite consensus disorder prediction 219 249 - -
Mupr2673g00007 495 MobiDBLite consensus disorder prediction 382 451 - -
Mupr2673g00007 495 ProSitePatterns NF-YA/HAP2 subunit signature. 311 331 IPR018362 GO:0003677|GO:0016602
Mupr2673g00007 495 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 145 422 IPR001289 GO:0003700|GO:0006355
Mupr2673g00007 495 MobiDBLite consensus disorder prediction 341 360 - -
Mupr2673g00007 495 MobiDBLite consensus disorder prediction 79 110 - -
Mupr2673g00007 495 MobiDBLite consensus disorder prediction 177 206 - -
Mupr2673g00007 495 Gene3D - 306 368 - -
Mupr2673g00007 495 ProSiteProfiles NF-YA/HAP2 family profile. 306 366 IPR001289 GO:0003700|GO:0006355
Mupr2673g00007 495 PRINTS CCAAT-binding transcription factor subunit B signature 340 363 IPR001289 GO:0003700|GO:0006355
Mupr2673g00007 495 PRINTS CCAAT-binding transcription factor subunit B signature 309 331 IPR001289 GO:0003700|GO:0006355
Mupr2673g00007 495 MobiDBLite consensus disorder prediction 339 474 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr2673g00007 Mupr-Chr2673 33674 37992 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr2673g00007 133 410 CCAAT-HAP2 Transcription Factor Family AT5G12840 52.669 1.05e-86 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Mupr2673g00007 CBFB_NFYA 2.4e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr2673g00007 K08064 - gmx:100808378 637.491