Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr2668g00001 ATGGCTGTTGCTGGTGTGCATAATGTGACTGTGCTCGAATCTACTTTTCTAAGGGACTCCCATTCTCAGTCATCTGGGAGGCAAGGGGAGGGAGGGAGGGGAGGCACCCGGTCCTCTTCAGTCTTACAAATGTGGCGAGAGATTGAAGATGAGCAGGTAGTGAGACAAGTTCAAGGAAGACCTGGGGAGGTCTTGCTTCAACAAAGGAGTGATGATGGGTTGGTTGTGGACCTTTCACAGGAAAATATGACAGATAGCAACCGCACAGAGGGGGATGTGATAGAAGATGCAGTTTTGGGTGAGAATGATTCTGAAACCTGGTCACAAAGTCAGAATGAGTTCCATTATGAACAGGAGGAATTGAACATTTCTAGCCGTGAAAACTCCTCTGATTTAGGAGAAGTTGAAAGGGAAAGAGTGAGACAGATATTCAGGGAGTGGATGAATAGTGGTTCTAGGGATCATGCATCAAATAATTCCCAAGGAAATAATGGTTCAAGGGGAGAATGGCTAGGGGAAACTGAGCAGGAAAGGGTGAGTAACATAAGGGAGTGGGTACAGATGAGTGGCCAGCAGAGAGGTGTTTCTTCTGGGGAAAATAGGGAAGAACAATCTTCTGAAATTGGTACCCAACTCGAATGTGTTCGTGATGGATTTGTTGTTGTTAATCAGAATGAGGGCCAAACTGAGCATATGCGGAGGGGAATGCGTAGATTACGTGGCCGACAGGTGCTGCTTGATATGCTTAAGAAGGCTGAGATGGAAAGGCAAAGAGAAGTTCAGGAATTGTTGGCCCATCGGGCTGTATCTCATTTTCCCCATCGCAATCGCATTCAGGCCTTGCTTAGAGGCAGGTTCTTGAGAAATGATAGATCGATTGATAATAACAGGTCCACTTCCATTGCAGAAAGTGAATTAGGCTTATTGAGACAAAAGCAGACTGTATCAGGTCTAAGGGAAGGTTTCTTTTTTAGAAAGGACAACTTTGGTTGCAGTCAGGTAACCAGTAACCCATCTGATACCTCATCCGAGAGTGATATTGACATTAATACAATTGAACAAACTGGGGCTAGCAGTTCACAAGCAGTTCCAACTGTACATTCTGAGCCTAATAACAAGAGAAGTGACCGACTTGAGATACCAGGTGCTCAGATTTGTTCACAAGGAACCACTTGTGAGAATTTAGATCGGCAGGGCTCTACTGCTCATGTAGAAACAAGTGATTGGGAATCATCTTCCAGTATCAGGGTTGAAAAAGAAGATGGCACTGGACAAAATGTTGATATGATGCCAACCGAAGATCCTTCTAATGACCTTACCCAACAAAGCTTGCAAATTGAAGATACAGAGCATGGCAATATGCAAGAGTTAAGCGAGGTACATACTGAGCAATCTCAGTGGGGTGATATAACCAATGATGAAAGCAATTTATCAAATCATGATGTTCGTGTATATAGCAATATTGTTGGTGATGTAGATTTGATTGAATCTATTGCTCTGGAAGTAGAGCAGCAGGAAGAAGTTATTATTGAAAATGATGAAAGTGACTGGCATCAAAGTGTGGATGATAATCAGCTCAGTAGCACAACAAATGAATGGCCCCAAAACATATTGGGAAGTGAAGATGGAGAAAATTCTCGTATGCAAGAGCAAGAAGCCCCTGAAGTGTGGCAAGAGGATGGTGGCTTTCAAGAGGCTGTGGAAATTTGGTTAGGAGGACCTTCGGATAATGAAGTAGCTCCAGTTGGTAGAATTCATGGATTTTATTTTCCCGAAGATGACAATGTATACAGTGTTGAACTCAGGGAATTGCTAAGTAGGAGAAGTGTCTCAAACCTCCTACGCAGCAGTTTCCGTGAAAGTCTTGATCAATTGATACAATCATACGTTGAAAGGCAAGGTCATGCTCACGTTGAATGGGAGCTGCAAGAAACAACCCCTTCTCCCTTGGCAGAACAAGACTCAGGGCAACAGAGTAGGGATCCAATTGTTGGTCCTCAGGGTAATAGCTCACTTGACCGACCCTCGCCACCAATACCTCCGCCTCAGCCTTTATGGGATCGGCATTCACGTCATGACAATTGGTCACAGAGTGACATAAATAATCAGCGCCTAGGAATTGAGTTGGATATTGTTAATGACTTGAGAATTGACATGGTTAGGCTACAGCAAAGGATGAATAATATGCAGAGAATGCTGGAGGCCTGCATGGATATGCAGCTAGAGTTACAACGCTCAATAAGACAAGAAGTCTCTGCGGCCCTAAATCGCTCAACTGTTTCATCAGGTGTTCATGACCATGTTTCACCAGACGATAAATCTAAATGGGAATGTGTGAGGAAAGGACTTTGCTGTATATGCTGCGAAAGCAATATTGATTCTTTGTTGTACAGATGTGGGCACATGTGCACATGTTCAAAATGTGCCAATGAGTTGCTCCAAAGTAGAAGAAAGTGTCCAATGTGTCAAGCACCAGTGGTGGAAGGTCACACATATAACAGAATACAGGATCCTAACAAGTTCTATCTCCTGGACGTTTCCAGCGTATTGTGTGTAGGTTTCTTGATGAAGAAATAA 2577 0.4358 MAVAGVHNVTVLESTFLRDSHSQSSGRQGEGGRGGTRSSSVLQMWREIEDEQVVRQVQGRPGEVLLQQRSDDGLVVDLSQENMTDSNRTEGDVIEDAVLGENDSETWSQSQNEFHYEQEELNISSRENSSDLGEVERERVRQIFREWMNSGSRDHASNNSQGNNGSRGEWLGETEQERVSNIREWVQMSGQQRGVSSGENREEQSSEIGTQLECVRDGFVVVNQNEGQTEHMRRGMRRLRGRQVLLDMLKKAEMERQREVQELLAHRAVSHFPHRNRIQALLRGRFLRNDRSIDNNRSTSIAESELGLLRQKQTVSGLREGFFFRKDNFGCSQVTSNPSDTSSESDIDINTIEQTGASSSQAVPTVHSEPNNKRSDRLEIPGAQICSQGTTCENLDRQGSTAHVETSDWESSSSIRVEKEDGTGQNVDMMPTEDPSNDLTQQSLQIEDTEHGNMQELSEVHTEQSQWGDITNDESNLSNHDVRVYSNIVGDVDLIESIALEVEQQEEVIIENDESDWHQSVDDNQLSSTTNEWPQNILGSEDGENSRMQEQEAPEVWQEDGGFQEAVEIWLGGPSDNEVAPVGRIHGFYFPEDDNVYSVELRELLSRRSVSNLLRSSFRESLDQLIQSYVERQGHAHVEWELQETTPSPLAEQDSGQQSRDPIVGPQGNSSLDRPSPPIPPPQPLWDRHSRHDNWSQSDINNQRLGIELDIVNDLRIDMVRLQQRMNNMQRMLEACMDMQLELQRSIRQEVSAALNRSTVSSGVHDHVSPDDKSKWECVRKGLCCICCESNIDSLLYRCGHMCTCSKCANELLQSRRKCPMCQAPVVEGHTYNRIQDPNKFYLLDVSSVLCVGFLMKK 858
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr2668g00001 858 Coils Coil 712 739 - -
Mupr2668g00001 858 MobiDBLite consensus disorder prediction 355 369 - -
Mupr2668g00001 858 MobiDBLite consensus disorder prediction 646 693 - -
Mupr2668g00001 858 MobiDBLite consensus disorder prediction 355 376 - -
Mupr2668g00001 858 MobiDBLite consensus disorder prediction 150 174 - -
Mupr2668g00001 858 SUPERFAMILY RING/U-box 783 829 - -
Mupr2668g00001 858 ProSiteProfiles Zinc finger RING-type profile. 784 823 IPR001841 -
Mupr2668g00001 858 MobiDBLite consensus disorder prediction 646 672 - -
Mupr2668g00001 858 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 771 832 IPR013083 -
Mupr2668g00001 858 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 828 - -
Mupr2668g00001 858 CDD mRING-HC-C3HC5_NEU1 784 828 - -
Mupr2668g00001 858 MobiDBLite consensus disorder prediction 189 209 - -
Mupr2668g00001 858 MobiDBLite consensus disorder prediction 151 170 - -
Mupr2668g00001 858 MobiDBLite consensus disorder prediction 17 39 - -
Mupr2668g00001 858 Pfam Zinc finger, C3HC4 type (RING finger) 781 826 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr2668g00001 Mupr-Chr2668 4376 9492 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr2668g00001 784 828 C3H Transcription Factor Family AT3G06140 42.222 6.44e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr2668g00001 - - gmx:100803851 1347.41