Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mupr2660g00002 | ATGGCTTCAAGCTCGGGGGCGGAAGGAGCGTCACTGGACGATGATTATGAATCGTTGATCTCAACGACCGACGTGGAGCTTCTGAAGCGAGCATGGCGCAACGAGAAGGCAGCCCCCGAGATTCTCCGCTTCGAATCTCATTTGATTTCTCGCGTCAAAGAACAGATTCAACTCATGGAAGAAACTGTGGAGGAGAAATCCACCGGCGGAACTGATCCTCTTTCAGTGTCTCTCTATCAGATGGACTTGGACAGAACCCTCTTTCTATTCAGATCCTACCTCAGGATCCGCATCCAGAAGATTGAGAAGTACATGTTTCACATCCGAAAAACTGAAGAACTTTGGAGCAGGCTATCTAAAGACGAGAAAGATTTCACCAGAACGTGTACAAATGACCTAACACGACATCTGGAGGAGAGTGTTCTGTCAAAGTTGCCTGAAAATTATCAGTCTGTTCTGAAGCAATCTGTAATAAGTGAAGAGGATGACATGGTCCCAGAACCACAACTAGACACATTTGTTTTGTGTAGAAGTAAAGAGTATCTCACAGGCATTCAACTCGAAGATGGACCTCTCTGTTTTGAGAAAAGTAAAAAAAATAGTTCAATTGATTATTCTGGCAGGTCGAAGCTGTTTGAGATGGAGCCAGGTGTCCTCCACTTCATATGTTACAAATCTATAAAGGCACTTGTGGAGAGTGGCAAAGTTGATCTACTCTGA | 720 | 0.4444 | MASSSGAEGASLDDDYESLISTTDVELLKRAWRNEKAAPEILRFESHLISRVKEQIQLMEETVEEKSTGGTDPLSVSLYQMDLDRTLFLFRSYLRIRIQKIEKYMFHIRKTEELWSRLSKDEKDFTRTCTNDLTRHLEESVLSKLPENYQSVLKQSVISEEDDMVPEPQLDTFVLCRSKEYLTGIQLEDGPLCFEKSKKNSSIDYSGRSKLFEMEPGVLHFICYKSIKALVESGKVDLL | 239 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mupr2660g00002 | 239 | FunFam | DNA replication complex GINS protein SLD5 | 10 | 229 | - | - | |
| Mupr2660g00002 | 239 | PIRSF | GINS_Sld5 | 1 | 239 | IPR008591 | GO:0006261 | |
| Mupr2660g00002 | 239 | PANTHER | SLD5 PROTEIN | 11 | 239 | IPR008591 | GO:0006261 | |
| Mupr2660g00002 | 239 | Pfam | GINS complex protein | 52 | 123 | IPR021151 | - | |
| Mupr2660g00002 | 239 | SUPERFAMILY | PriA/YqbF domain | 170 | 239 | - | - | |
| Mupr2660g00002 | 239 | SUPERFAMILY | GINS helical bundle-like | 21 | 153 | IPR036224 | - | |
| Mupr2660g00002 | 239 | Pfam | DNA replication complex GINS protein SLD5 C-terminus | 168 | 239 | IPR031633 | - | |
| Mupr2660g00002 | 239 | Gene3D | - | 11 | 229 | - | - | |
| Mupr2660g00002 | 239 | CDD | GINS_A_Sld5 | 24 | 142 | IPR038749 | - | |
| Mupr2660g00002 | 239 | CDD | GINS_B_Sld5 | 168 | 239 | IPR031633 | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Mupr2660g00002 | 1 | 164 | Core DNA Replication Machinery Family | AT5G49010 | 65.244 | 6.74e-71 | 213 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Mupr2660g00002 | K10735 | - | gmx:100784291 | 370.548 |