Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr2650g00004 ATGAGGATATATGTTGCATTTTCAATTGCTTGGTGGAGTATTAGAGAAGGTAGTGAAAAAGAATTGGGATGGATAGGTTTTGATTTTCAGTTGGCAATACTTGTTAGGTGGAGTGGACAAAAATGGCATGCTGTTGCTTCGTGGACTTGGGATGCGCAGGATGAAACGTGTGGGATTTGTAGGATGGCCTTTGATGGATGTTGTCCTGACTGTAAACTTCCTGGCGATGACTGCCCACTGATTTGGGGTGTATGCAATCACGCATTTCATTTGCACTGTATCCTGAAATGGGTGAATTCTCAGACATCACAAGCGCATTGCCCCATGTGCCGTCGGGAGTGGCAGTTTAAAGGATGA 357 0.4482 MRIYVAFSIAWWSIREGSEKELGWIGFDFQLAILVRWSGQKWHAVASWTWDAQDETCGICRMAFDGCCPDCKLPGDDCPLIWGVCNHAFHLHCILKWVNSQTSQAHCPMCRREWQFKG 118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr2650g00004 118 CDD RING-H2_APC11 54 116 IPR024991 GO:0005680|GO:0008270|GO:0031145|GO:0061630|GO:0097602
Mupr2650g00004 118 SUPERFAMILY RING/U-box 40 117 - -
Mupr2650g00004 118 ProSiteProfiles Zinc finger RING-type profile. 68 111 IPR001841 -
Mupr2650g00004 118 PANTHER RING BOX 38 117 - -
Mupr2650g00004 118 FunFam Anaphase-promoting complex subunit 11 29 118 - -
Mupr2650g00004 118 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 33 118 IPR013083 -
Mupr2650g00004 118 Pfam Anaphase-promoting complex subunit 11 RING-H2 finger 40 117 IPR024991 GO:0005680|GO:0008270|GO:0031145|GO:0061630|GO:0097602
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr2650g00004 Mupr-Chr2650 25841 27591 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr2650g00004 68 111 C3H Transcription Factor Family AT1G72220 41.304 1.44e-06 43.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr2650g00004 K03358 - gmx:100776546 192.2