Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr2650g00003 ATGTTTGGAACTCGAGACAGTGCAACCATGGCTAGGAAGAAAGTGAAACTTGCCCTTATCTCTGATGACACGGCAAGGAAAGTGACGTATAAGAAAAGGAAGAAGGGTATCATCAAGAAGGTGAGTGAACTCACCATTCTCTGCGGGATCCCAGCCTGTGCTATAATCTCCAGTCCTTTTGATCCTATGCCGGAGACTTGGCCTGATTCAAAGGCGACCAAGCAAGTGATTCAAAGGTATATGAATGCATCTACACTAGATCAAAGCAAGAATATCAACCAAGAGAGTTTCATCAAGCAGAGGATTGCCAAAGCCCATCACCAATTGAGGAAGCAACGTCAAGATAACCTTGACAAACAAAACACCTTGTCCTTATTCCAATACATACAAGGTGAAGAACACCTACCAGATACTATTCAAGAACTGAAAAAACTTCACAAGCTGATTGAGAAAAATATGAAGGAGATTGAAAATAAGTTGGCCAAGATCATTTGTGAATCTTCTTAG 507 0.4122 MFGTRDSATMARKKVKLALISDDTARKVTYKKRKKGIIKKVSELTILCGIPACAIISSPFDPMPETWPDSKATKQVIQRYMNASTLDQSKNINQESFIKQRIAKAHHQLRKQRQDNLDKQNTLSLFQYIQGEEHLPDTIQELKKLHKLIEKNMKEIENKLAKIICESS 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr2650g00003 168 PRINTS MADS domain signature 32 47 IPR002100 GO:0003677|GO:0046983
Mupr2650g00003 168 PRINTS MADS domain signature 12 32 IPR002100 GO:0003677|GO:0046983
Mupr2650g00003 168 ProSiteProfiles MADS-box domain profile. 10 58 IPR002100 GO:0003677|GO:0046983
Mupr2650g00003 168 PANTHER MADS BOX PROTEIN 12 160 - -
Mupr2650g00003 168 SMART madsneu2 10 69 IPR002100 GO:0003677|GO:0046983
Mupr2650g00003 168 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 20 59 IPR002100 GO:0003677|GO:0046983
Mupr2650g00003 168 SUPERFAMILY SRF-like 9 91 IPR036879 GO:0003677|GO:0046983
Mupr2650g00003 168 FunFam Agamous-like MADS-box protein AGL80 22 106 - -
Mupr2650g00003 168 Coils Coil 139 166 - -
Mupr2650g00003 168 Gene3D - 22 106 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr2650g00003 Mupr-Chr2650 18811 19447 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr2650g00003 10 160 Type I MADS-box Gene Family AT5G48670 46.405 1.98e-34 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mupr2650g00003 SRF-TF 4.1e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr2650g00003 - - gmx:100792290 213.386