Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr2650g00002 ATGACAAGGAAAAAAGTGAAACTTGCCTATATCTCCGACGCCACAGCAAGGAAATCCACGTACAAGAAAAGGAAGAAGGGTATCATTAAGAAGGTGAGCGAACTCACCATTCTTTGTGGGATCCCAGCATGCGCTATAATTTCCAGTCCTTTTGATCCTAAACCAGAGATTTGGCCAAATCCAGAGGGAGCCAATCAAGTGATTCAAAGGTATCTGAATGCATCAGTGCTAGATCAAAGCAAGAATGTCAACCAAGAGAGCTTCATCATTCAAAGGATTGTCAAAGCCCAAGACCAGCTAAAGAAGCAACGTTGTGAGAACCATGAGAAGGAGATGACCTTGTGCATGTTCCAGTACATGAAAGGTGAAGACCTGCCAAATACTGCTAATGAACTGAAAGAACTCGACAGGCTGCTTGAGAAGAATATGAGACAAATTGGAAATAAGTTGGCTGCGCTCAATTCCAAGAATTATACCACCATGTGGAGTCTGAGTGGTCTCCATGAGAATAAAATAACCGAGCACTTCTGTGACAAAGAACTCCTAAAACTAAGAAAAAGAACAAACAAAGAAAACAAATCAAAATCAACTCACTGGGTGAGATTTGATAAGCCATCCCAGCGCATATTTGCTACCATGAGAATGTCCACCAAAGGCAATCATTCAAATCAGCATGCCAATGCCATCTATAGTTTGCATGGGAGCAAGCATGCATCCAGAAGCAGAAAAGTCAGGAATGAAGACATGACAATGACAGCTACAGATTCAACATATGCTATACAACTATCACGGTAG 795 0.4164 MTRKKVKLAYISDATARKSTYKKRKKGIIKKVSELTILCGIPACAIISSPFDPKPEIWPNPEGANQVIQRYLNASVLDQSKNVNQESFIIQRIVKAQDQLKKQRCENHEKEMTLCMFQYMKGEDLPNTANELKELDRLLEKNMRQIGNKLAALNSKNYTTMWSLSGLHENKITEHFCDKELLKLRKRTNKENKSKSTHWVRFDKPSQRIFATMRMSTKGNHSNQHANAIYSLHGSKHASRSRKVRNEDMTMTATDSTYAIQLSR 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr2650g00002 264 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mupr2650g00002 264 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mupr2650g00002 264 Coils Coil 93 113 - -
Mupr2650g00002 264 PANTHER MADS BOX PROTEIN 3 151 - -
Mupr2650g00002 264 FunFam Agamous-like MADS-box protein AGL80 13 97 - -
Mupr2650g00002 264 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
Mupr2650g00002 264 SUPERFAMILY SRF-like 2 85 IPR036879 GO:0003677|GO:0046983
Mupr2650g00002 264 MobiDBLite consensus disorder prediction 232 256 - -
Mupr2650g00002 264 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Mupr2650g00002 264 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mupr2650g00002 264 Gene3D - 13 95 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr2650g00002 Mupr-Chr2650 8858 12228 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr2650g00002 1 157 MADS-box Gene Family AT5G26630 44.375 1.11e-35 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mupr2650g00002 SRF-TF 2.6e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr2650g00002 - - gmx:100792290 231.876