Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr2650g00001 ATGGCTAGGAAGAAAGTGAGACTTGCTTTTATCTCCAATGTGACAGCAAGGAAAGCCACATACAAGAAAAGGAAGAAGGGCATCATGAAGAAAGTGAGTGAACTCACTGTTCTTTGTGGGATCCCAGCTTGTGCTATAATTTCCAGCCCTTTTGATTCTAAGCCAGAGGTTTGGCCAAATCCAGAAGGAGTCAAGCAGGTGATTCAAAAGTATCTGAATGCATCTGTGCTAGATGAAAACAAGAATGTCAACCAAGAGAGCTTCATCGCTCAAAGTATTATCAAAGCCCAAGACCAACTAAAGAAGCAACGTCGGGAGAACCATGAGAAGGAGATGACCTTGTACATGTTCCAGTACATGCAAGGTGAAGACTTGCCAAATAATGTTAATGAACTGAAAGAACTCAATAATATGATTGAGAAAAATATGAAGGAAATTGAAAATAAGTTCGTTGTTCTCGATTATATTTGA 471 0.3928 MARKKVRLAFISNVTARKATYKKRKKGIMKKVSELTVLCGIPACAIISSPFDSKPEVWPNPEGVKQVIQKYLNASVLDENKNVNQESFIAQSIIKAQDQLKKQRRENHEKEMTLYMFQYMQGEDLPNNVNELKELNNMIEKNMKEIENKFVVLDYI 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr2650g00001 156 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mupr2650g00001 156 Coils Coil 93 113 - -
Mupr2650g00001 156 Coils Coil 129 149 - -
Mupr2650g00001 156 PANTHER MADS BOX PROTEIN 3 149 - -
Mupr2650g00001 156 Gene3D - 14 98 IPR036879 GO:0003677|GO:0046983
Mupr2650g00001 156 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mupr2650g00001 156 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mupr2650g00001 156 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 53 IPR002100 GO:0003677|GO:0046983
Mupr2650g00001 156 SUPERFAMILY SRF-like 3 84 IPR036879 GO:0003677|GO:0046983
Mupr2650g00001 156 FunFam Agamous-like MADS-box protein AGL80 13 97 - -
Mupr2650g00001 156 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr2650g00001 Mupr-Chr2650 974 1878 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr2650g00001 3 153 Type I MADS-box Gene Family AT1G65300 42.208 6.68e-39 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mupr2650g00001 SRF-TF 8.1e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr2650g00001 - - gmx:100792290 247.669