Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr2641g00002 ATGGGGAGGAAGAAGGTGGAGATAAAGGGAATCGAGAACAAATGCACACGGCAGATAACATTCTCGAAGAGGCGCAATGGATTGATGAAGAAAGCGCGCGAGTTGTCCATTCTCTGCGACGCGAACGTGGCGCTCGTCGTCTTCTCCAGCACGGGAAGCTCTTCGAGCTCAGTAACGGTGACAGTTAATAATAACAACAGAGTCATATCATGCTACAAGCATCGTCAAATTGGAGTATTGATTCATGATGAGTTGGATTTGGAGTATATTAATAGATAA 279 0.4516 MGRKKVEIKGIENKCTRQITFSKRRNGLMKKARELSILCDANVALVVFSSTGSSSSSVTVTVNNNNRVISCYKHRQIGVLIHDELDLEYINR 92
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr2641g00002 92 ProSiteProfiles MADS-box domain profile. 1 52 IPR002100 GO:0003677|GO:0046983
Mupr2641g00002 92 Gene3D - 13 81 IPR036879 GO:0003677|GO:0046983
Mupr2641g00002 92 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mupr2641g00002 92 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mupr2641g00002 92 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mupr2641g00002 92 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 57 - -
Mupr2641g00002 92 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 53 IPR002100 GO:0003677|GO:0046983
Mupr2641g00002 92 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mupr2641g00002 92 SUPERFAMILY SRF-like 1 73 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr2641g00002 Mupr-Chr2641 29833 30807 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr2641g00002 1 52 MADS-box Gene Family AT5G10140 73.077 6.08e-23 85.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mupr2641g00002 SRF-TF 4.9e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr2641g00002 K09264 - gmx:100778392 85.1149