Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr2641g00001 ATGCGTATACAAGACACACCCACACACAGCGAGCGAGCCACGAAAATATTCACAGGATTTATTCTAATTTCATACTTTTGTAAGAAAGAGAAGGTGAAGGAGAAAGAGAGAGAGAGAGAGATGGGAAGGGGTAGAGTGGAGTTGAAGAGAATTGAGAACAAGATCAACAGGCAAGTGACCTTCGCTAAACGAAGGAACGGGCTTTTGAAGAAAGCTTACGAGCTTTCCGTTCTTTGCGATGCCGAGGTTGCTCTCATCATCTTCTCCAATAGAGGAAAGCTGTACGAGTTTTGCAGTAGTTCAAGCATGCTCAAAACGCTAGAGAGGTACCAGAAATGTAACTATGGTGCGCCTGAAGCGAATGTGTCTACACGGGAAGCCTTGGTAATGGAGTTAAGCAGTCAACAGGAGTACTTGAAGCTGAAGGCACGTTATGAGGCCCTACAACGGTCCCAGAGGAACCTTATGGGAGAAGATCTTGGCCCTCTAAGCAGCAAAGAGCTCGAGTCTCTTGAAAGGCAGCTAGATTCGTCCTTGAAGCAAATCAGATCAACAAGGACCCAGTTCATGCTGGATCAGCTCTCTGATCTTCAACGTAAGGAACACTTGCTAAGTGAGGCTAACAGGTCTCTGAGACAAAGGTTGGAAGGGTATCAAATAAATCCACTCCAGCTGAATCCTGGTGTTGAAGACATGGGATATGGCCGCCATCCAGGTCAAACTCAGGGTGACGCCCTCTTTCAACAATTGGAGTGTGAGCCAACGTTACAAATTGGGTATCAGCCTGATCCAGTATCAGTGGTGACAGCAGGCCCAAGCATGAGCAATTTCATGGCAGGATGGTTACCATAG 852 0.4683 MRIQDTPTHSERATKIFTGFILISYFCKKEKVKEKEREREMGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEANVSTREALVMELSSQQEYLKLKARYEALQRSQRNLMGEDLGPLSSKELESLERQLDSSLKQIRSTRTQFMLDQLSDLQRKEHLLSEANRSLRQRLEGYQINPLQLNPGVEDMGYGRHPGQTQGDALFQQLECEPTLQIGYQPDPVSVVTAGPSMSNFMAGWLP 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr2641g00001 283 PANTHER SERUM RESPONSE FACTOR HOMOLOG 43 209 - -
Mupr2641g00001 283 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 50 97 IPR002100 GO:0003677|GO:0046983
Mupr2641g00001 283 Coils Coil 194 214 - -
Mupr2641g00001 283 PRINTS MADS domain signature 63 78 IPR002100 GO:0003677|GO:0046983
Mupr2641g00001 283 PRINTS MADS domain signature 43 63 IPR002100 GO:0003677|GO:0046983
Mupr2641g00001 283 PRINTS MADS domain signature 78 99 IPR002100 GO:0003677|GO:0046983
Mupr2641g00001 283 ProSitePatterns MADS-box domain signature. 43 97 IPR002100 GO:0003677|GO:0046983
Mupr2641g00001 283 CDD MADS_MEF2_like 42 116 IPR033896 GO:0000977|GO:0045944
Mupr2641g00001 283 ProSiteProfiles MADS-box domain profile. 41 101 IPR002100 GO:0003677|GO:0046983
Mupr2641g00001 283 SMART madsneu2 41 100 IPR002100 GO:0003677|GO:0046983
Mupr2641g00001 283 SUPERFAMILY SRF-like 42 115 IPR036879 GO:0003677|GO:0046983
Mupr2641g00001 283 ProSiteProfiles K-box domain profile. 131 221 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mupr2641g00001 283 Coils Coil 168 188 - -
Mupr2641g00001 283 Pfam K-box region 133 215 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mupr2641g00001 283 FunFam MADS-box transcription factor 7 53 140 - -
Mupr2641g00001 283 Gene3D - 53 123 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr2641g00001 Mupr-Chr2641 21095 28660 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr2641g00001 41 283 MADS-box Gene Family AT1G24260 74.797 1.73e-120 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Mupr2641g00001 K-box 7e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr2641g00001 - - gmx:100778931 462.996