Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr2640g00001 ATGAACAAGATCAAAAGGCAAGTGACCTTTGCTAAACGAAGGGAGGGGCTTTTGAGGAAAGCTTTCCGTTCTTTGCGATGCCAAGATGCTCTCATCATCTTTTCCAATGGAGGAAAGTTCATGCTTAAAACGATAGAGATGTACCAGAAATGTAACTATGGTGTGCCTGAAGCGAATGTGTCTACACAGGAAGCCTTGGTAATG 204 0.4314 MNKIKRQVTFAKRREGLLRKAFRSLRCQDALIIFSNGGKFMLKTIEMYQKCNYGVPEANVSTQEALVM 68
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr2640g00001 68 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 2 21 IPR002100 GO:0003677|GO:0046983
Mupr2640g00001 68 Gene3D - 2 55 IPR036879 GO:0003677|GO:0046983
Mupr2640g00001 68 SUPERFAMILY SRF-like 2 52 IPR036879 GO:0003677|GO:0046983
Mupr2640g00001 68 ProSiteProfiles MADS-box domain profile. 1 21 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr2640g00001 Mupr-Chr2640 2086 4658 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr2640g00001 2 68 MADS-box Gene Family AT1G24260 58.974 4.37e-22 83.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mupr2640g00001 SRF-TF 3.6e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr2640g00001 - - gmx:100778931 90.5077