Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr2624g00003 ATGGGCGATAACATGTCTTCTTCTTCTTCCACACAGGACGAAATCTCCCTTGTCCTGCGTCAGTTTCTTCTTCGTTCATCCCTCACAAACCACGAGGGTAACCACGCACAAGCACAAGCACAAGCACAAGCACGCACCGCCAAAACTGGGATCTCGCCTTACAACTCTTCTGCTGCCAACGTGGCACCCACCGGGAATGAAACTGACGACAACGACTGCGAGAGTGAGGACGCCGAAGCGCTGCTCCAAGAGATTCCTGTTCCTACAAAGTCGCTTCGTTCTGGAAGTTCCTCCAAAAGGAGCAGAGCTGCTGAAGTTCATAACATGTCTGAAAAGCGGAGGAGGAGTAGGATCAATGAGAAATTGAAGGCTTTGCAAAATCTAATTCCGAATTCCAACAAGACTGATAAGGCTTCGATGCTTGACGAAGCTATTGAATATCTTAAACAGCTCCAGCTCCAAGTACAGATGCTGTCAATGAGAAATGGGTTGAGTTTGCATCCTATGTTCTTCCCAGAAGGTTTGCAACCTCTGCAATTGTCTCAGATGAAAATGGATTCAGGTGAAGAGAACAGATCTATCCCTTCAAACACAGCAACTACTCTGCCTATGCACCAAGAAAATCCCATGCACTATTCGTCCAATCTACCTAATAAACACACAGTGGCAAATCAGTCATCCATGCCCACTCCATCATATATACTCAACTCAGACACTTTTGGGCTGGAATCCCCAATTCCAGAAAATATAAGATCATTTCAACACACAAGATTTTCTGAGATATGCAGGGAAGAGATACTGCAACAGCAGCAGCATTTAAATGCAAACCATTCAGATACCAATCCATTAGGTTGTTCTCAAGGTACATTGGTTACAGCATCACTTTCCTTTGATATGCAAACATCTGCAGTGAAGGACAACAGCACTTTGGAAAGTGATCAATCAGGAATGATACTGAGA 960 0.4458 MGDNMSSSSSTQDEISLVLRQFLLRSSLTNHEGNHAQAQAQAQARTAKTGISPYNSSAANVAPTGNETDDNDCESEDAEALLQEIPVPTKSLRSGSSSKRSRAAEVHNMSEKRRRSRINEKLKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLSMRNGLSLHPMFFPEGLQPLQLSQMKMDSGEENRSIPSNTATTLPMHQENPMHYSSNLPNKHTVANQSSMPTPSYILNSDTFGLESPIPENIRSFQHTRFSEICREEILQQQQHLNANHSDTNPLGCSQGTLVTASLSFDMQTSAVKDNSTLESDQSGMILR 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr2624g00003 320 Pfam Helix-loop-helix DNA-binding domain 106 152 IPR011598 GO:0046983
Mupr2624g00003 320 Coils Coil 141 161 - -
Mupr2624g00003 320 MobiDBLite consensus disorder prediction 89 103 - -
Mupr2624g00003 320 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 99 162 IPR036638 GO:0046983
Mupr2624g00003 320 Coils Coil 108 128 - -
Mupr2624g00003 320 MobiDBLite consensus disorder prediction 33 115 - -
Mupr2624g00003 320 CDD bHLH_AtPIF_like 103 164 IPR047265 -
Mupr2624g00003 320 Gene3D - 97 161 IPR036638 GO:0046983
Mupr2624g00003 320 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 10 268 IPR031066 -
Mupr2624g00003 320 MobiDBLite consensus disorder prediction 33 68 - -
Mupr2624g00003 320 SMART finulus 108 157 IPR011598 GO:0046983
Mupr2624g00003 320 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 102 151 IPR011598 GO:0046983
Mupr2624g00003 320 FunFam Basic helix-loop-helix transcription factor 97 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr2624g00003 Mupr-Chr2624 39640 43100 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr2624g00003 66 184 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G36930 72.727 1.21e-45 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mupr2624g00003 HLH 7.4e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr2624g00003 - - vun:114177198 411.379