Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr2610g00004 ATGGGGAGGGGAAGAGTAGAACTGAAGAGAATAGAGAACAAGATAAACAGACAGGTAACGTTTGCAAAGAGGAGAAATGGGCTTCTCAAGAAAGCCTATGAGCTTTCTGTTCTCTGTGATGCTGAGGTTGCCCTTATCATCTTTTCCACCCGTGGCAAGCTTTATGAATTCTGTAGCAGCTCCAGTCTGGCTGTGTATTTACACGTACTATAA 213 0.4366 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSTRGKLYEFCSSSSLAVYLHVL 70
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr2610g00004 70 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Mupr2610g00004 70 FunFam MADS-box transcription factor MADS-MC 13 69 - -
Mupr2610g00004 70 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mupr2610g00004 70 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mupr2610g00004 70 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mupr2610g00004 70 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mupr2610g00004 70 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Mupr2610g00004 70 Gene3D - 13 68 IPR036879 GO:0003677|GO:0046983
Mupr2610g00004 70 SUPERFAMILY SRF-like 2 65 IPR036879 GO:0003677|GO:0046983
Mupr2610g00004 70 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 62 - -
Mupr2610g00004 70 CDD MADS_MEF2_like 2 61 IPR033896 GO:0000977|GO:0045944
Mupr2610g00004 70 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr2610g00004 Mupr-Chr2610 43059 44784 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr2610g00004 1 63 MADS-box Gene Family AT1G24260 96.825 2.11e-38 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mupr2610g00004 SRF-TF 2.8e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr2610g00004 - K09264 vvi:100232867 124.02