Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr2596g00003 ATGAATCACTTTTCTGTTGACACTGAAGATTCTTTTGCGAGCTTGCTTGAGCTTGCAGCCAATAATGATGTTGAGGGTTTCAAACGATTGATTGAGTGTGATCCTTCCTCCATGGATGAGGTTGGGCTGTGGTATGGTCGCCGCAAGGGGTCGAAGCAGATGGTCAATGAGCAAAGAACTCCTTTGATGGTTGCTGCTACTTATGGTAGCATTGGCATTATGAAGCTGATTCTTTCTCTATCCGAGGTTGATGTCAACCGGCCTTGTGGCTTTGATAAAAGCACTGCCCTTCATTGTGCGGCATCAGGTGGGGCCGAAAATGCAGTTGATGCTGTGAGACTGCTTCTGGAAGCTGGGGCTGATCCGAATTCTGTGGATGCCAATGGGCATCGTCCTGGAGATGTTATTGCTTTTCCTCCCAAGCTTGAACATGTCAAAAACAGCCTTGAAGAGCTTCTTCAAACTGATGATTCTATTGCTGGGTGTAATCTTAGGGTGATCACAACCTCATCCAATGCGTATTCTCCGCCTTTGTCAACCTCACCAGACATTGGGTCTCCTTCTGCTGCAGATTTCCAGTTGAAGTTGAAGTCAAATGATGTTCCTGTTTCTTCTGCATCCGAGAAGAAAGAGTATCCGGTTGATCCATCCCTTCCAGACATCAAGAACAGCATATATTCAACTGATGAATTCCGAATGTATTCGTTCAAGGTTCGACCTTGTTCACGAGCTTATTCACATGATTGGACTGAATGCCCTTTTGTCCATCCAGGGGAGAATGCTCGAAGAAGGGACCCGAGAAAGTACCATTACAGCTGTGTCCCTTGCCCTGATTTTCGGAAGGGTGCTTGCAGGCGGGGAGACATGTGTGAATATGCTCACGGGGTTTTTGAGTGCTGGTTGCATCCTGCTCAATATCGAACCCGGCTTTGCAAGGATGGGACAAATTGTTCCAGAAGGGTTTGCTTCTTTGCCCACACTGCTGAAGAGCTTCGACCATTATATGTTTCCACTGGTTCTGCTGTTCCTTCTCCTCGGTCAAGCACATCTTCTGCCATGGATTTTGCTGCAGCCATGAACATGTTGCCTGGTTCTCCTTCCTCGATGTCAGTCATGTCTCCTTCACCATTCACTCCACCCATGTCACCGTCTGCCAATGGCATTTCACACTCTTCTGTTGCTTGGCCCCAGCCAAACATTCCAGCATTGCATCTTCCGGGAAGTAATTTTCAGTCCAGTCGTTTGAGATCTTCACTCAATGCTAGAGATATTCCTATGGATGATTTTGATTTGTTACATGATTATGATCAGCAGCAACAGCTCCTTAATGAGTTATCATGCCTCTCTCCACAGCCTATAAATTCAAATACTTTAAACCGCTCTGGTCGCATGAAACCCCTGACTCCTTCAAATCTTGATGATCTCTTTTCTGCCGAGAGTTCTTCTCCTCGATATGCTGATCCAACATTGACTTCAGCTGTTTTTTCTCCAACTCACAAATCAGCTGTCCTCAATCAGTTTCAACAGCAGCAGAGCTTGTTGGCACCCGTGAACACAAACTTTTCTTCTAAAAATGTTGAGCATCCTTTATTGCAGGCCTCATTTGGGGTTCAGGCATCAGGAAGAATGTCTCCACGCAATGTGGAACCTATTTCTCCAATGGGTTCTAGGATTTCTATGTTAGCTCAACGCGAGAAGCAACAATTTCGCAGCTTAAGCTCCCGGGAACTTGGCTCCAACTCTGCTGTTGCTGCTGCAGCTGCAGCCTCTGCCAATTCTTGGTCAAAATGGGGATCGCCCAATGGTAAGATGGATTGGTCAGTTGGTGCTGATGAAGTAGGTAAGCTGCGAAGATCATCTTCGTTTGAGCTTGGGAACAATGGCGAGGAGCCTGATTTATCGTGGGTGCAGTCACTTGTTAAAGAATCACCAACTGAAATTAAAGATAAACTGGCAACTAGTGTCTCAAGTGTTGCAGCAGCTGGATCCTCCAGTGAGGTATCAAATATGAACACACAAAGGGACACTGTTGATCCTGCTGTGTTAGGAGCATGGTTTGAACAAATGCAGCTTGATCATCTTGTGGCTCAGCAAAACTGA 2100 0.4614 MNHFSVDTEDSFASLLELAANNDVEGFKRLIECDPSSMDEVGLWYGRRKGSKQMVNEQRTPLMVAATYGSIGIMKLILSLSEVDVNRPCGFDKSTALHCAASGGAENAVDAVRLLLEAGADPNSVDANGHRPGDVIAFPPKLEHVKNSLEELLQTDDSIAGCNLRVITTSSNAYSPPLSTSPDIGSPSAADFQLKLKSNDVPVSSASEKKEYPVDPSLPDIKNSIYSTDEFRMYSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTNCSRRVCFFAHTAEELRPLYVSTGSAVPSPRSSTSSAMDFAAAMNMLPGSPSSMSVMSPSPFTPPMSPSANGISHSSVAWPQPNIPALHLPGSNFQSSRLRSSLNARDIPMDDFDLLHDYDQQQQLLNELSCLSPQPINSNTLNRSGRMKPLTPSNLDDLFSAESSSPRYADPTLTSAVFSPTHKSAVLNQFQQQQSLLAPVNTNFSSKNVEHPLLQASFGVQASGRMSPRNVEPISPMGSRISMLAQREKQQFRSLSSRELGSNSAVAAAAAASANSWSKWGSPNGKMDWSVGADEVGKLRRSSSFELGNNGEEPDLSWVQSLVKESPTEIKDKLATSVSSVAAAGSSSEVSNMNTQRDTVDPAVLGAWFEQMQLDHLVAQQN 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr2596g00003 699 Pfam Ankyrin repeats (3 copies) 18 126 IPR002110 GO:0005515
Mupr2596g00003 699 Gene3D - 271 333 - -
Mupr2596g00003 699 PANTHER UNKEMPT FAMILY MEMBER 17 643 IPR045234 -
Mupr2596g00003 699 SMART ANK_2a 92 124 IPR002110 GO:0005515
Mupr2596g00003 699 SMART ANK_2a 10 40 IPR002110 GO:0005515
Mupr2596g00003 699 SMART ANK_2a 57 87 IPR002110 GO:0005515
Mupr2596g00003 699 ProSiteProfiles Ankyrin repeat region circular profile. 92 126 - -
Mupr2596g00003 699 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 275 295 IPR000571 GO:0046872
Mupr2596g00003 699 ProSiteProfiles Ankyrin repeat profile. 92 127 IPR002110 GO:0005515
Mupr2596g00003 699 SUPERFAMILY Ankyrin repeat 15 139 IPR036770 -
Mupr2596g00003 699 ProSiteProfiles Zinc finger C3H1-type profile. 275 297 IPR000571 GO:0046872
Mupr2596g00003 699 SMART c3hfinal6 270 296 IPR000571 GO:0046872
Mupr2596g00003 699 SMART c3hfinal6 305 328 IPR000571 GO:0046872
Mupr2596g00003 699 Gene3D - 8 158 IPR036770 -
Mupr2596g00003 699 FunFam Zinc finger CCCH domain-containing protein 66 228 296 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr2596g00003 Mupr-Chr2596 44348 46447 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr2596g00003 9 692 C2H2 Transcription Factor Family AT5G12850 53.977 0.0 690
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mupr2596g00003 Ank_2 3.5e-10 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr2596g00003 - - ccaj:109796653 1254.58