Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr2590g00003 ATGGAAAAGAGGGGTGACGATGCTGATGATGAGCTTCAACTTAATGCTGATTTTGTGCCAGATCCTCCCCAGACATGTACTGGAAATGAAAAGGCCTTGTCGATTCCTCAGTCCAGACGACCCAATCTATCCTCACTGCAAATACCGGCATGGTCACTAGATATTGCATTATCTACTTTTGCAAAGACTGATGGTCCTTCAGTTTCACTATCAAGTCCTGGTTCCGCAAGAGGACTTCCCCCAAGGCCAAATTCAGCCAAACTCAGGTCTTCTATGAGAAGTTTACTTCCTCAGAGGAGCTTCAAGACAACTACTTGTTCCCAGGATATTGAGAGGACAGGTCTTATAGTTCCTAGCACTCCCCCTTCAGATGCTCCTTTGGATAAACCTTCCACTTCAACCCATCTCTCTCTTAATAATAAGATTAAGGTCATCTCCCCATCAACAAAACTTGCACATTCATTGCCAGTTACTCCATTTGCAATTTCAGCTGCAGAGAATGTACATGGAAGACATCAAGGGTGTGATTCTGGTTCAAGTACAATGGAAGTTCAGCAGCATATGACCCGATCATTTTCAGTCCCAGTTAATGGCAAAGCCACTAATTTAAGGGTTACAGATTCTAAGGGCTTGATTCGTGTAATTTCAGCAAAACCACATCTTGAAACTGTTGGTGTCGGTAGAACCTCAACTGATGGTGCTTTGGTTCCAGAGATTGCCATTGAAGATGCTACTGAGGATATTCCAGAGGAACAAGCAGTTTGTAGGATTTGTTTGGTAGAGCTTGGGGAAGGAGGGAATACACTCAAGATGGAATGCAGTTGTAAAGGTGATCTTGCACTTGCTCACCAAGACTGTGCAGTAAAGTGGTTTAGTATTAAGGGAAACAGGACTTGTGATGTCTGCAAGCACGATGTCCTAAACCTCCCTGTAACACTGTTGAAAATTTCTAATCCTCAATCTACTGCTAGTCAGGCATCAAATGTGCCGCAACAGACAGAATTAGCTTATTACAGGACCTGGCAGGATGTACCAGTACTCATCTTGGTCAGCATGCTTGCATACTTTTGTTTTCTAGAGCAACTACTGGTTTCAGATTTGGGCCCTCGTGCTCTTGCCATTTCATTACCTTTCTCCTGTGTTTTAGGTCTCCTTTCATCTATGATTGCGTCAACCATGGTGATCAGGAGTTACATATGGGCTTATGCTTGCTTCCAGTTTGCAATTCTTATCCTGTTTGCTCATTTATTTTATACTATTCTCAATGTTAATGCAATTCTCTCCATTCTTCTTTCCTCATTCACTGCATTTGGGATTTCAATCAGTATGAATTCTCTCGTTATGGAATATATTGGATGGAGAACTACTAGGCGGATTCAAACCTCCATTGAGAATGTTAACATGACAGAGCAGCAGCGCCGTGAGCATGTACTACAACAGGGACAGGAAGATCAACTACAACATCAATGA 1470 0.4259 MEKRGDDADDELQLNADFVPDPPQTCTGNEKALSIPQSRRPNLSSLQIPAWSLDIALSTFAKTDGPSVSLSSPGSARGLPPRPNSAKLRSSMRSLLPQRSFKTTTCSQDIERTGLIVPSTPPSDAPLDKPSTSTHLSLNNKIKVISPSTKLAHSLPVTPFAISAAENVHGRHQGCDSGSSTMEVQQHMTRSFSVPVNGKATNLRVTDSKGLIRVISAKPHLETVGVGRTSTDGALVPEIAIEDATEDIPEEQAVCRICLVELGEGGNTLKMECSCKGDLALAHQDCAVKWFSIKGNRTCDVCKHDVLNLPVTLLKISNPQSTASQASNVPQQTELAYYRTWQDVPVLILVSMLAYFCFLEQLLVSDLGPRALAISLPFSCVLGLLSSMIASTMVIRSYIWAYACFQFAILILFAHLFYTILNVNAILSILLSSFTAFGISISMNSLVMEYIGWRTTRRIQTSIENVNMTEQQRREHVLQQGQEDQLQHQ 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr2590g00003 489 CDD RING_CH-C4HC3_MARCH 255 303 - -
Mupr2590g00003 489 SUPERFAMILY RING/U-box 251 305 - -
Mupr2590g00003 489 MobiDBLite consensus disorder prediction 64 134 - -
Mupr2590g00003 489 MobiDBLite consensus disorder prediction 27 41 - -
Mupr2590g00003 489 PANTHER OS02G0165000 PROTEIN 32 471 - -
Mupr2590g00003 489 Pfam RING-variant domain 255 302 IPR011016 GO:0008270
Mupr2590g00003 489 ProSiteProfiles Zinc finger RING-CH-type profile. 247 309 IPR011016 GO:0008270
Mupr2590g00003 489 SMART ringv_2 254 303 IPR011016 GO:0008270
Mupr2590g00003 489 MobiDBLite consensus disorder prediction 1 41 - -
Mupr2590g00003 489 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 240 309 IPR013083 -
Mupr2590g00003 489 MobiDBLite consensus disorder prediction 87 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr2590g00003 Mupr-Chr2590 10197 16151 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr2590g00003 266 364 C3H Transcription Factor Family AT5G59000 39.216 6.91e-14 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr2590g00003 - - gmx:100789461 786.563