Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr2588g00006 ATGGGTTTGCAAAACCAGTTAAACGACGTGTCGTCGGGTTCGATTCCGCTGCTGGTGCTGGCGCAGATAGCCACGTGCGTCAACTACCTCCGCTCCATGCTCCTCGCGCTCTTGCAATCCCTCGGCCTCTGCAGATTCCACACCGACCAGATCGTCGACGACCGCTTCCTTGCCGCCGTCGGATCCGGCCTCGCCGGACTCATCATGCTCTCCGATCAGCTCACGCTCAACAACCAATTCCGCTACTCCGGCGCCGCCGTCGCTGACAACCCCTGCGTCGTGTGCCAGGCCAGCTTCCAGGACGGCGACCAGGTCCGCATGCTCCCCTGCCGCCACGTCTTCCACCGGCGCTGCTTCGACGGATGGCTCCACCACTACAAGTTTAACTGCCCCCTCTGCCGCTCCCCGCTTCTCTCCGACCAGCGCGTGGCCCTCACCGAGCGCCGCCTCGGCCAACAACTCATCTCCTGTATTTTTGCTGAAGGGTTTTCTACCGTCTGA 501 0.6248 MGLQNQLNDVSSGSIPLLVLAQIATCVNYLRSMLLALLQSLGLCRFHTDQIVDDRFLAAVGSGLAGLIMLSDQLTLNNQFRYSGAAVADNPCVVCQASFQDGDQVRMLPCRHVFHRRCFDGWLHHYKFNCPLCRSPLLSDQRVALTERRLGQQLISCIFAEGFSTV 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr2588g00006 166 ProSiteProfiles Zinc finger RING-type profile. 92 134 IPR001841 -
Mupr2588g00006 166 SMART ring_2 92 133 IPR001841 -
Mupr2588g00006 166 PANTHER RING ZINC FINGER PROTEIN-RELATED 78 143 - -
Mupr2588g00006 166 SUPERFAMILY RING/U-box 85 140 - -
Mupr2588g00006 166 Pfam Ring finger domain 92 134 IPR001841 -
Mupr2588g00006 166 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 72 143 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr2588g00006 Mupr-Chr2588 50003 50700 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr2588g00006 1 157 C3H Transcription Factor Family AT1G15100 47.799 1.66e-46 147