Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr2582g00011 ATGGATTCACCCAAGTTTTTGCCAACCAACCTTTCCTCATCCCTCGAAACCAACAAAAGCAATAACCCCGACCACTTCATCGTTGAGGACCTCTTCGACTTCAACAACAACGACGTTGTCATCACCGACGCCACCTTCGACTCTGTCCCCGGCATCTCCACCGACTCTTCCACCGTAACCGCCGTTGACAGCTGCAACTCCTCCTCCTTCTCCGGCTCCGACCCCAACCCCGTTATCGATATCGGTAGCAGGAATCTTTCCGACGGCAATTTCTCCGGTGACCTATGTGTTCCGTATGATGATATAGCGGAGCTAGAATGGCTTTCGAATTTCGTGGAGGAATCGTTTTCGAGCGAGGACCTGCAGCAGTTGCAGCTGATATCAGGCTTGAAGGGGCCAAACGACGACATGTCAGAGGCCCGCGGGTTCCAGTCCGAGCCCACCAGAAACAGCCCGATATTCAATTCGGAAGTGTCGGTCCCGGCCAAGGCCCGTAGCAAAAGGTCCCGCGGGCCCCCATGCAACTGGACCTCGCGCCTCCTCGTCCTATCTCCAACGACTTCGTCGTCTTCAGAGCCTGACGTCGTGGTTCCCAGTCCCACCTCCACTCTGCCTGGCCCGGTGCCCACAAAAAAGCCCGCAAAGGCGACTCCGAGGAAGAAGGACGGCAGCGACGGCAGCGGCGGAGACGGGCGCAGGTGCCTGCATTGCGCCACGGACAAGACGCCGCAGTGGCGGACCGGGCCCATGGGCCCGAAGACGCTGTGCAACGCCTGTGGCGTGAGGTACAAGTCGGGGCGGTTGGTGCCCGAGTACAGGCCCGCGGCGAGCCCAACGTTCATGCTGACAAAGCACTCCAACTCGCACCGCAAGGTGCTGGAGCTTCGGAGGCAGAAGGAGATGGTGCGGGCCCAGCAGCACCAACAAGAGCAGTTCTTACAACACCATCACCAGAGCATGATGTTTGATGTATCCAACGGTGACGATTACTTGATCCACCAACACGTGGGCCCCGATTTCAGGCAGCTGATC 1032 0.5862 MDSPKFLPTNLSSSLETNKSNNPDHFIVEDLFDFNNNDVVITDATFDSVPGISTDSSTVTAVDSCNSSSFSGSDPNPVIDIGSRNLSDGNFSGDLCVPYDDIAELEWLSNFVEESFSSEDLQQLQLISGLKGPNDDMSEARGFQSEPTRNSPIFNSEVSVPAKARSKRSRGPPCNWTSRLLVLSPTTSSSSEPDVVVPSPTSTLPGPVPTKKPAKATPRKKDGSDGSGGDGRRCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFMLTKHSNSHRKVLELRRQKEMVRAQQHQQEQFLQHHHQSMMFDVSNGDDYLIHQHVGPDFRQLI 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr2582g00011 344 PANTHER GATA TRANSCRIPTION FACTOR 18 309 - -
Mupr2582g00011 344 Pfam GATA zinc finger 234 267 IPR000679 GO:0006355|GO:0043565
Mupr2582g00011 344 Gene3D - 230 316 IPR013088 GO:0006355|GO:0008270
Mupr2582g00011 344 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 229 292 - -
Mupr2582g00011 344 PIRSF Txn_fac_GATA_plant 9 325 IPR016679 GO:0003677|GO:0005634|GO:0045893
Mupr2582g00011 344 SMART GATA_3 228 278 IPR000679 GO:0006355|GO:0043565
Mupr2582g00011 344 MobiDBLite consensus disorder prediction 130 233 - -
Mupr2582g00011 344 MobiDBLite consensus disorder prediction 141 157 - -
Mupr2582g00011 344 MobiDBLite consensus disorder prediction 215 233 - -
Mupr2582g00011 344 CDD ZnF_GATA 233 280 IPR000679 GO:0006355|GO:0043565
Mupr2582g00011 344 ProSitePatterns GATA-type zinc finger domain. 234 259 IPR000679 GO:0006355|GO:0043565
Mupr2582g00011 344 FunFam GATA transcription factor 223 310 - -
Mupr2582g00011 344 MobiDBLite consensus disorder prediction 179 198 - -
Mupr2582g00011 344 ProSiteProfiles GATA-type zinc finger domain profile. 228 264 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr2582g00011 Mupr-Chr2582 34678 36273 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr2582g00011 85 344 C2C2-Gata Transcription Factor Family AT5G25830 58.759 1.52e-97 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Mupr2582g00011 GATA 3.1e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr2582g00011 - - gmx:100800146 456.062