Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr2576g00005 ATGACAGAGGCTAAAGAAGCACTGGTGACCAAAATTGTGAAAAGGGGTTCCTTGAATCTCATGGCATTTCAGCACTACATTTCCCAGGATTTGAAAACCATCCCAAATGCTGTGACTGAGACAGAGAACTTCAATGGTTGTTTCGATTGCAACATCTGCTTGGAGTTTGCACATGAACCAGTGGTGACTCTCTGTGGGCACCTCTACTGCTGGCCATGCATCTACAAGTGGCTCCATGTCCAAAGTGATTCTCTTGCACCTGATGAGCTCCCACAATGCCCCGTTTGCAAGGCTGATATATCCCACAGCACAATGGTCCCACTCTATGGCCGTGGCCAGGCCACACCTGAAGGAAAAACATCTTCTTGTGATGTTTTTACACCACCAAGACCACCTGCTTCATGTGCTCAAACCTTGTTGGCAACATCATCTCAAAATGGCCAGCAACTTCCATATCGTAATCCTTATCAGAATCACTACTTCAGCTCCCCTTCATACCAAGAACAAGATGCCACTTCACCAATGCTCAATTTTGGTGCCACCATGACTCCAGAATCCCTCCACCACCCTGTCACTGGGATGTTTGGGGAGATGGTTTATGCTCGAGTGTTTGGCAACTCAGAAAATTTGTATGCATACCCGAATTCTTATCAGCTGATGGGAATTACCACTATCCTAAAAGAAAACTTCGACAAATTTCTGTTGCAACCTGATATCAGACCTTACTCCTCAAAATTAACATGA 744 0.453 MTEAKEALVTKIVKRGSLNLMAFQHYISQDLKTIPNAVTETENFNGCFDCNICLEFAHEPVVTLCGHLYCWPCIYKWLHVQSDSLAPDELPQCPVCKADISHSTMVPLYGRGQATPEGKTSSCDVFTPPRPPASCAQTLLATSSQNGQQLPYRNPYQNHYFSSPSYQEQDATSPMLNFGATMTPESLHHPVTGMFGEMVYARVFGNSENLYAYPNSYQLMGITTILKENFDKFLLQPDIRPYSSKLT 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr2576g00005 247 CDD RING-HC_AtRMA-like 48 98 - -
Mupr2576g00005 247 SMART ring_2 50 96 IPR001841 -
Mupr2576g00005 247 Pfam Zinc finger, C3HC4 type (RING finger) 50 96 IPR018957 GO:0046872
Mupr2576g00005 247 ProSiteProfiles Zinc finger RING-type profile. 50 97 IPR001841 -
Mupr2576g00005 247 SUPERFAMILY RING/U-box 44 109 - -
Mupr2576g00005 247 ProSitePatterns Zinc finger RING-type signature. 65 74 IPR017907 -
Mupr2576g00005 247 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 25 161 IPR013083 -
Mupr2576g00005 247 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 38 208 IPR045103 GO:0005783|GO:0006511|GO:0061630
Mupr2576g00005 247 FunFam E3 ubiquitin-protein ligase RMA1H1 isoform A 26 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr2576g00005 Mupr-Chr2576 45833 48296 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr2576g00005 30 220 C3H Transcription Factor Family AT4G27470 41.000 1.89e-45 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr2576g00005 K10666 - gmx:100816864 360.147