Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr2554g00001 ATGGCTTCTCCTCCACCCTTATCGTTAAACGTTGTCGGATCAGACACAGACACCTTCCCAACTGTTTCAACTTCGTTAACACCGCCGTCACCGCGCCGTTCGTCTCCGTTACAGAACCTCAGCCCCAGCATTCTCATCATCGTAACGGTCCTCGCCGTCACCGTCATCGTCTCCCTCGCGCTCTGTTTCCTCCTTCGCCACCTCAACCGCCGCTGCCTCCGCCGCTTCTCCTCCTCCTCCGCCGCGCCCTCAGCTGCCGCCACGCCGATTTTCAACTCCAGCCGCCGCATCTCGCCGGAAGTTCCGCACTCCTCCGCCTCCGTCATTGATTCTCTCCCGCTCTTCACGTTCTCCTCCGTCACTCGGCGCGCCGCCGCCTCCGGCGGCGACTGCGCCGTGTGCCTCTCGAAGTTCCACAATCACGATCTCCTCCGTCTCCTCCCTCTCTGCTGTCACGCCTTCCACGCCGAGTGCATCGACACGTGGCTCCAGTCGAACCTCACGTGTCCGCTCTGCCGCTCCCCTATCGCCGCCGCCGAATCGGACCTCGCGAAAATTCTACGGCCGCCGTCCGACGGCAGCAGTGACAGCTTCCGCCTTGAGATAGGAAACATTAGCCGTCGCGGAACGGAAGCCGACGGAGCCACTACTGCCACCGCGCGCGGCGGCTCCAGGTCGCGGTCCTATTCCATTGGATCGTTCGAGTATTTGGTGGACGACGAATCGGAGGTTCAGTTCAGCCACGACCGCAGGAGGAGCGTCGATGACGCGAAGGAGTTTCCGGCGCCGGCAGATGCTCCGGCGAGTCAAAATGAAGCAACTCTTGCCGGCGAGGTGGCTGGCGTTAGAAGCTGGCTTAAGGATTACATGGATAGGGTCTCCGCTTCTATTTCGTCGCGAACGGCGTCGTTTCGAAGCTCTGGAAGATTCTTCAGTGGTGGCGGGAGTAGTCGCCGAAGCGACGTCGTTCCGGTCGCTGTGGAGTATGACTTGGAGGGTAACCGAATTGGAGAAGAGATCAGCGAAATGTTTCGTTGGCTTTCAGGGGTATGA 1053 0.6049 MASPPPLSLNVVGSDTDTFPTVSTSLTPPSPRRSSPLQNLSPSILIIVTVLAVTVIVSLALCFLLRHLNRRCLRRFSSSSAAPSAAATPIFNSSRRISPEVPHSSASVIDSLPLFTFSSVTRRAAASGGDCAVCLSKFHNHDLLRLLPLCCHAFHAECIDTWLQSNLTCPLCRSPIAAAESDLAKILRPPSDGSSDSFRLEIGNISRRGTEADGATTATARGGSRSRSYSIGSFEYLVDDESEVQFSHDRRRSVDDAKEFPAPADAPASQNEATLAGEVAGVRSWLKDYMDRVSASISSRTASFRSSGRFFSGGGSSRRSDVVPVAVEYDLEGNRIGEEISEMFRWLSGV 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr2554g00001 350 CDD RING-H2_EL5-like 130 173 - -
Mupr2554g00001 350 SMART ring_2 131 172 IPR001841 -
Mupr2554g00001 350 MobiDBLite consensus disorder prediction 1 37 - -
Mupr2554g00001 350 MobiDBLite consensus disorder prediction 247 271 - -
Mupr2554g00001 350 ProSiteProfiles Zinc finger RING-type profile. 131 173 IPR001841 -
Mupr2554g00001 350 SUPERFAMILY RING/U-box 125 178 - -
Mupr2554g00001 350 MobiDBLite consensus disorder prediction 9 37 - -
Mupr2554g00001 350 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 104 182 IPR013083 -
Mupr2554g00001 350 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 36 249 - -
Mupr2554g00001 350 FunFam E3 ubiquitin-protein ligase ATL4 104 178 - -
Mupr2554g00001 350 Pfam Ring finger domain 130 173 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr2554g00001 Mupr-Chr2554 6199 7251 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr2554g00001 21 180 C3H Transcription Factor Family AT4G28890 36.364 2.03e-25 104
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr2554g00001 K10663 - gmx:100817751 466.463