Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr254g00002 ATGGAGGATTCCGAGGGAGTCCTCAGCTTCGATTTCGAGGGTGGCCTCGACGCCGCCCCCTCCGCCGCCGCCGCCGCGTCCGGCCCGCTCGTCCAGCACGACTCCTCTGTTGCGGCCTCCGCCGTGTCCAACGGAGGTCCCGCCGCCTCCGCCCCCTCCGCCGCGGACCCCGCGGCTGGCAACGTCCCCGGCCGGCGAAGCTTCCGGCAGACGGTGTGCCGGCACTGGCTGCGCAGCCTGTGCATGAAGGGCGACGCGTGCGGGTTCTTGCACCAGTACGACAAGGCGCGGATGCCGGTGTGCCGCTTCTTCAGGCTCTACGGAGAGTGCCGAGAACAGGATTGCGTCTATAAACACACCAATGAAGACATCAAGGAGTGTAACATGTACAAGTTGGGATTTTGTCCTAATGGGCCTGATTGCCGATATAGGCATGCAAAATCTCCTGGACCTCCACCTCCTGTTGAAGAGGTCCTTCAAAAGATCCAACATTTATATTCCTACAATTATAATTCATCTAACAAATTTTACCAACAAAGGGGTGCTAGCTATAATCAACAACAAGCTGAAAAATCCCAGCCTCCTCAAGGAACTAATTCTACAAATCAAGGGGTGACTGGAAAACCTTTGCCAGCAGAGTCGGGAAATGTCCAGCCACAGCAACAAGTTCAGCAGTCTCAGCAGCCGGTCAACCAGAGCCAAATGCAAAATCTTGCTAATGGCCAGCCTAATCAAGCCAATAAAACTGCAATCCCTTTACCTCAAGGAATATCTAGTTGCAATCGTGAAAATTTGGAGTTATCTGTACAACAAGGAGTATGGGCAACTCAAAGGAGCAATGAATCCAAACTAAATGAAGCATTTGACTCTGTGGAAAATGTGATATTAATTTTCTCAGTCAACCGTACTAGACATTTCCAGGGTTGTGCAAAGATGACGTCCAGAATTGGTGGTTCTGTTGCTGGGGGGAACTGGAAATATGCTCATGGAACTGCACATTATGGGCGAAATTTCTCTGTTAAATGGTTGAAGTTATGTGAGCTGTCGTTCCACAAAACTCGCCATCTAAGGAATCCATACAATGAGAACTTACCAGTGAAGATAAGTAGAGATTGCCAGGAGCTGGAGCCCTCTATTGGAGAACAGCTGGCATCCTTGCTTTATCTTGAGCCAGATAGTGAACTTATGGCTATCTCAGTTGCAGCAGAGTCTAAACGGGAAGAAGAGAAAGCTAAGGGAGTGAACCCAGACAACGGAGGAGAGAATCCAGATATTGTCCCATTTGAAGACAATGAAGAAGAGGAAGAGGAAGAAAGCGATGAAGAGGAGGAGAGCTTTGGCCATGCCGTAGGTCCAGCAGGCCAAGGCAGAGGTAGGGGAAGAGGTATGATGTGGCCGCCTCATATGCCTATGGGGCGTGGAGCCCGACCAATCCCCGGAATGCAGGGCTTCAACCCTGTAATGATAGGTGATGGGTTATCCTATGGGCCTGTTGCACCTGATGGTTTTGGTATGCCAGATCTTTTCGGTGTGGGACCCCGTGCTTTTGCCCCATATGGTCCTAGGTTCTCCGGTGATTTTGGAGGCCCCCCAGCAGCCATGATGTTTCGCGGGCGGCCCTCTCAACCTGGGATGTTTCCAGGTGGCGGGTTTGGGATGATGATGAATCCTGGACGTGGTCCCTTCATGGGAGGGATGGGGGTTGCAGGTGCAAATCCACCAAGAGGTGGTAGGCCAGTTAATATGCCTCCAATGTTTCCACCACCTCCACCCCTACCTCAGAATACAAACCGTGTTGCAAAGAGAGATCAAAGAACTACTGATAGAAACGATAGGTATGGTTCAGGATCAGAGCAGGGTAAGAGTCAAGACATGCTCAGTCAAAGTGGTGCACCTGATGATGACATGCAGTATCAGCAAGGATACAAAGGAAACCAGGATGATCACCCTGCTGTGAACAACTTCAGAAATGATGATAGTGGTGAAAGTGAGGATGAGGCACCTAGGCGTTCAAGACATGGAGAGGGGAAAAAGAAAAGGATCAAGATG 2049 0.5076 MEDSEGVLSFDFEGGLDAAPSAAAAASGPLVQHDSSVAASAVSNGGPAASAPSAADPAAGNVPGRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKARMPVCRFFRLYGECREQDCVYKHTNEDIKECNMYKLGFCPNGPDCRYRHAKSPGPPPPVEEVLQKIQHLYSYNYNSSNKFYQQRGASYNQQQAEKSQPPQGTNSTNQGVTGKPLPAESGNVQPQQQVQQSQQPVNQSQMQNLANGQPNQANKTAIPLPQGISSCNRENLELSVQQGVWATQRSNESKLNEAFDSVENVILIFSVNRTRHFQGCAKMTSRIGGSVAGGNWKYAHGTAHYGRNFSVKWLKLCELSFHKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDSELMAISVAAESKREEEKAKGVNPDNGGENPDIVPFEDNEEEEEEESDEEEESFGHAVGPAGQGRGRGRGMMWPPHMPMGRGARPIPGMQGFNPVMIGDGLSYGPVAPDGFGMPDLFGVGPRAFAPYGPRFSGDFGGPPAAMMFRGRPSQPGMFPGGGFGMMMNPGRGPFMGGMGVAGANPPRGGRPVNMPPMFPPPPPLPQNTNRVAKRDQRTTDRNDRYGSGSEQGKSQDMLSQSGAPDDDMQYQQGYKGNQDDHPAVNNFRNDDSGESEDEAPRRSRHGEGKKKRIKM 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr254g00002 683 MobiDBLite consensus disorder prediction 426 444 - -
Mupr254g00002 683 SUPERFAMILY CCCH zinc finger 67 98 IPR036855 GO:0046872
Mupr254g00002 683 MobiDBLite consensus disorder prediction 41 62 - -
Mupr254g00002 683 FunFam Cleavage and polyadenylation specificity factor 30 kDa subunit 62 123 - -
Mupr254g00002 683 ProSiteProfiles Zinc finger C3H1-type profile. 121 148 IPR000571 GO:0046872
Mupr254g00002 683 ProSiteProfiles YTH domain profile. 252 387 IPR007275 GO:0003723
Mupr254g00002 683 Pfam YT521-B-like domain 258 314 IPR007275 GO:0003723
Mupr254g00002 683 Pfam YT521-B-like domain 331 386 IPR007275 GO:0003723
Mupr254g00002 683 Gene3D ph1033 like domains 256 390 - -
Mupr254g00002 683 MobiDBLite consensus disorder prediction 181 257 - -
Mupr254g00002 683 MobiDBLite consensus disorder prediction 577 595 - -
Mupr254g00002 683 MobiDBLite consensus disorder prediction 402 463 - -
Mupr254g00002 683 MobiDBLite consensus disorder prediction 652 672 - -
Mupr254g00002 683 MobiDBLite consensus disorder prediction 566 683 - -
Mupr254g00002 683 MobiDBLite consensus disorder prediction 616 651 - -
Mupr254g00002 683 Gene3D - 63 124 - -
Mupr254g00002 683 CDD YTH 257 387 IPR007275 GO:0003723
Mupr254g00002 683 ProSiteProfiles Zinc finger C3H1-type profile. 67 94 IPR000571 GO:0046872
Mupr254g00002 683 SMART c3hfinal6 95 121 IPR000571 GO:0046872
Mupr254g00002 683 SMART c3hfinal6 67 93 IPR000571 GO:0046872
Mupr254g00002 683 SMART c3hfinal6 123 147 IPR000571 GO:0046872
Mupr254g00002 683 MobiDBLite consensus disorder prediction 601 615 - -
Mupr254g00002 683 PANTHER YTH YT521-B HOMOLOGY DOMAIN-CONTAINING 35 675 IPR045168 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr254g00002 Mupr-Chr254 5855 18552 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mupr254g00002 YTH 1.1e-18 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr254g00002 K14404 - gmx:100802826 1159.82