Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr2540g00009 ATGGCTTGCAATATGTTGCGTCGCTATAATGTGTTTGAGGATTTGATAATAGAAGTCTTACTCCTTGTTCTCTTCCATTACACTGTGCAAGTAGAAAGTGATTGGATGGACAAACATTCTGGGGATTCTATGCCAACTCAAGGTGCTACAGGTCCATCTGAGATTCTCTCGCTTAATGTTGCCAAAAAAGTGGGAAGCAATGCATGGGGTATACCAGGTGGGATCGATGCATTTCATGCTTCAAGTGATGCTAGCTTGTTTTGTATAAATATTGCTGATTCAGAGCATTATGGTCAATCTGTCGATGATAACTTGCCTGTATTAGGCAAAGTTATCAAAGAGACTGAGGGACAAGATCCACTTGGACATATTGAAATCAGTGCAGTTGGAAACATGCTTCCTGATGATGAAGATGAGCTATTAGCTGGGATAATGGATGATTTTGACCTGGGTGAGTTGCCCAGCCAACTGGAGGATCTGGATGAAAATGATCTTTTTGGCAGTGGAGGGGGGTTTGAAATGGATTTTGAACCCCATGAAAGCCTTAGTATTGGTATATCAAAGATAAGCTTATCTGATGAAGTTCATTCAAATGGAGTTGGTCATTATGCAATCCCAAATGGCGTGGGAACAGTGGCTGGGGAGCATCCTTATGGAGAGCATCCATCAAGGACATTATTTGTGCGGAACATCAACAGTAATGTTGAAGACTCTGAATTAAGATCACTATTTGAGCAATATGGCGATATCAGAACACTGTACACTGCATGCAAGCATAGGGGCTTTGTGATGATATCTTACTATGACATTCGAGCTGCTCGCACTGCAATGCGTGCTTTACAAAACAAGCCCTTGAGACGAAGAAAACTTGATATTCATTTTTCAATTCCTAAGGATAACCCCTCAGAAAAGGACATTAACCAAGGAACCCTTGTAGTGTTCAACTTGGATCCCTCAGTATCAAATGATGACCTCCGTCAAATATTTGGGGCTTATGGGGAGGTCAAAGAGATCAGGGAAACACCACATAAGAGACACCATAAATTTATTGAATATTATGATGTTAGAGCAGCAGAGGCTGCTCTTAAAGCATTAAATCAAAGTGACATTGCTGGGAAACGCATCAAACTTGAGCCCAGCCGCCCTGGTGGAGCACGTCGAAACTTGATGCAGCAACTGAGTCAAGAATTGGAGCAAGATGAAGCTCGAACTTTTAGACACCAAGTGGGTTCACCTATTGGCAATTCTCCTCCCGGTAACTGGGCACAATTTGGTAGTCCAGTTGAACATAATGCATTAGGTTCTTTTAGCAAATCCCCTGGTTTGAATTTTGCCAGCCCAATGAATACCAACTTTTTGCCTGGATTGGCTTCAATTCTTTCTCCACATTTATCAAGCTCTCCGAAGATTGCACCAATTGGCAAGGACCTTGGAAGGGCTAACAATGCAAAGCAGATATTTGCGAGCCCAGGATCATCACAAGGAGCTTCTTTTCAGCATTCTATGTCCTTCCCTGAGCAAAAAGTAAATGCAATTCCTAGGCCTATGTCTACTTATGGTGAATCAAATTCAAGTTCGTCAAGTATTGGAACACTTTCTGGTCCTCAATTTCTTTGGGGAAGTCCAACTCCTCACTCAGAGCATTCAAACACATCTGCCTGGCCTTCATCTTCTGTGGGGCTTCCATTTACTTCTAGTGAACAAAGACAGGGATTCCCATATACTAGTCAGCACAGTTCTTTTCATGGTTCTCATCCACGTCATCATGTGGGATCTGCTCCATCTGGCCTTCCTCTTGATAGACATTTTAGCTACTTCCCAGAGTCACCTGAAACTTCTCTCAAGAGCTCAATTGCATTTGGGAATATGAATCACAGTGATAGGAATATTTTAATGAACATGGGTGGTCATGCATCTCTAGGTGTCAATGTTGGGCTTTCAGGAAATACTTCTGAAATGAGTTCACCCAATTTCAGAATGATGTCACTACCCAGGCATGGCTCCCTGTTTCTTGGAAATGGTTTGTTTTCTGGACCAGGAGCAACTAACACTGACAGATTAGGTGATCGTGATCGAAGTAGGCGGCCTGACAATAGTGGGAACCAAATTGATAGTAAGAAGCAGTATCAGCTTGATTTGGACAAAATTATGAGTGGGGAAGACATAAGGACTACTTTAATGATTAAAAACATTCCTAACAAGTACACTTCAAAGATGCTGCTTGCTGCAATTGATGAGAATCACCGGGGTAGTTATGATTTTCTCTACTTGCCAATTGACTTCAAGAACAAGTGTAACGTGGGCTATGCTTTCATCAATATGGTGTCTCCTTTACACATCATCCCCTTCTATAAGGCATTTAATGGGAAGAAATGGGAGAAGTTTAATAGTGAGAAAGTGGCATCCCTAGCATATGCTCGGATCCAGGGAAAGGGTGCACTAGTGACACATTTTCAGAATTCAAGCCTAATGAATGAGGATAAGTGGTGCCGGCCAATTCTCTTTCATTCCGAGGGCCAGGTTATTGGCGATCAGGAACATTTCCTCTCAAGCAATTTGAATGTATGCATTCGTCAACCAGATGGATCTTACTCGGGTGATTTGTTGTTGAGCCCCGAGGGCAATTTGGAAGAAAAGCCAGAGAAAGATTAA 2652 0.4227 MACNMLRRYNVFEDLIIEVLLLVLFHYTVQVESDWMDKHSGDSMPTQGATGPSEILSLNVAKKVGSNAWGIPGGIDAFHASSDASLFCINIADSEHYGQSVDDNLPVLGKVIKETEGQDPLGHIEISAVGNMLPDDEDELLAGIMDDFDLGELPSQLEDLDENDLFGSGGGFEMDFEPHESLSIGISKISLSDEVHSNGVGHYAIPNGVGTVAGEHPYGEHPSRTLFVRNINSNVEDSELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSEKDINQGTLVVFNLDPSVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEYYDVRAAEAALKALNQSDIAGKRIKLEPSRPGGARRNLMQQLSQELEQDEARTFRHQVGSPIGNSPPGNWAQFGSPVEHNALGSFSKSPGLNFASPMNTNFLPGLASILSPHLSSSPKIAPIGKDLGRANNAKQIFASPGSSQGASFQHSMSFPEQKVNAIPRPMSTYGESNSSSSSIGTLSGPQFLWGSPTPHSEHSNTSAWPSSSVGLPFTSSEQRQGFPYTSQHSSFHGSHPRHHVGSAPSGLPLDRHFSYFPESPETSLKSSIAFGNMNHSDRNILMNMGGHASLGVNVGLSGNTSEMSSPNFRMMSLPRHGSLFLGNGLFSGPGATNTDRLGDRDRSRRPDNSGNQIDSKKQYQLDLDKIMSGEDIRTTLMIKNIPNKYTSKMLLAAIDENHRGSYDFLYLPIDFKNKCNVGYAFINMVSPLHIIPFYKAFNGKKWEKFNSEKVASLAYARIQGKGALVTHFQNSSLMNEDKWCRPILFHSEGQVIGDQEHFLSSNLNVCIRQPDGSYSGDLLLSPEGNLEEKPEKD 883
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr2540g00009 883 MobiDBLite consensus disorder prediction 675 705 - -
Mupr2540g00009 883 SUPERFAMILY RNA-binding domain, RBD 221 384 IPR035979 GO:0003676
Mupr2540g00009 883 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 311 376 IPR000504 GO:0003723
Mupr2540g00009 883 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 226 290 IPR000504 GO:0003723
Mupr2540g00009 883 MobiDBLite consensus disorder prediction 685 701 - -
Mupr2540g00009 883 Gene3D - 213 307 IPR012677 -
Mupr2540g00009 883 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 224 297 IPR000504 GO:0003723
Mupr2540g00009 883 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 309 382 IPR000504 GO:0003723
Mupr2540g00009 883 CDD RRM1_MEI2_like 223 299 IPR034453 -
Mupr2540g00009 883 FunFam Protein MEI2-like 1 308 403 - -
Mupr2540g00009 883 SMART rrm1_1 225 293 IPR000504 GO:0003723
Mupr2540g00009 883 SMART rrm1_1 725 801 IPR000504 GO:0003723
Mupr2540g00009 883 SMART rrm1_1 310 378 IPR000504 GO:0003723
Mupr2540g00009 883 Gene3D - 308 406 IPR012677 -
Mupr2540g00009 883 PANTHER RNA RECOGNITION MOTIF-CONTAINING 150 838 - -
Mupr2540g00009 883 SUPERFAMILY RNA-binding domain, RBD 725 809 IPR035979 GO:0003676
Mupr2540g00009 883 Pfam RNA recognition motif 2 723 819 IPR007201 -
Mupr2540g00009 883 MobiDBLite consensus disorder prediction 513 596 - -
Mupr2540g00009 883 CDD RRM3_MEI2_like 726 811 IPR034454 -
Mupr2540g00009 883 MobiDBLite consensus disorder prediction 516 581 - -
Mupr2540g00009 883 FunFam MEI2-like protein 5 isoform 2 213 307 - -
Mupr2540g00009 883 CDD RRM2_MEI2_like 308 378 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr2540g00009 Mupr-Chr2540 32231 37678 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr2540g00009 164 456 Eukaryotic Initiation Factors Gene Family AT1G71770 24.776 1.91e-07 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr2540g00009 - - gmx:100812324 1365.13