Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr2478g00001 ATGAACGAGAACAAGATTGATTGGGGAGGACTGATTCAACAAAGTTATGGACTAAGTGGGGATTTTAATTCTGAGTTTGGCAATCATTACTGTCAATATTTTGATATCAGACAGGGTTGGAATATAGGATCACTTGCCATGGTTGGAGAAGGAGGTGCAGATCAGTTACCAAATATAGGCCATGTCAAATCATCTGGCACCATTATGAGCCGTTTTGAGTCACCAGCTTCTGCCTTTTATGCTGCAGAAAACTGCATGGGATTTGCAGAATATGATTGCCAACTTGGTGTTCACTCTTTCAGCTCTCAGTTATGTAAGATCAATGATTTGGAATTCCCTTTGTATCAATCTCCCAGGGAAAACCTTTTCTTGGATTCAGCAAACCAACCTGACCCCAACTTTGACTTGTCAAACACTTTGCAATCCATAGTGAAATCTCAATTGAGTAGTAGTAATAATCAATGCCGTGGATCCCCTGAAAAGTCCAATAAAAATTCATATGGGAAGTTGTTCCTTCCAATTGAACCACAGTTGTTCATTGATGATGTCGCCTCGGTTAGAAGGTGCTCATCATTTCCTAACAAAGGAAATCAGGACCATACAGTTGCTCGTGGATCTTATAGTTTACCTGTTGCACAGCTGAGATTCTCTTCTCAGAATGAGAAGTTGTCTCCAACACTTTCAGCAGGAAGTGTGTCTACTACTTTTGGAAACTCTGTTTCTAATGGGGCAGTAGTGTCAAGTAAAACACGTATAAGATGGACTAAGGATCTTCATGAGAAGTTTGTTGAGTGTGTGAATCGCCTTGGAGGCGCTGACCAGGCAACACCAAAAGCTATATTAAAGATGATGGACACAGATGGTTTGACTATCTTCCATGTCAAAAGTCATTTGCAGAAATATAGAATTGCAAAATTCATTCCAGAGCCCGGTCAAGGTTCATTGAACATAAAATGTTGTCCTGTTTCAGGGAAATCTGACAAAAGAACCCACACAAAGGATGTGCATCAACTTGATGTCAAAACTGGCTTACAAATTAGAGAGGCACTTAAGCTGCAATTAGATGCTCAAAGGTGTCTTCATGAACAATTAGAGATTCAGAGAAAATTACAGTTGCGAATTGAGGAACAAGGCAGGGAACTAAAAAAAATGTTTGACCAGCAGCAAAAGTCAAGTAATAACCTCTTAAATACTCAGAAATCAGCCACTGATGAAACAACAATGTGTCATAAAAGTGGCGAGGTTTCGGTTTCCCAAGGGGTTAACAATTCCTTCTTCCCTTCCAAGATCTCTCCAAGCCAATAA 1305 0.4 MNENKIDWGGLIQQSYGLSGDFNSEFGNHYCQYFDIRQGWNIGSLAMVGEGGADQLPNIGHVKSSGTIMSRFESPASAFYAAENCMGFAEYDCQLGVHSFSSQLCKINDLEFPLYQSPRENLFLDSANQPDPNFDLSNTLQSIVKSQLSSSNNQCRGSPEKSNKNSYGKLFLPIEPQLFIDDVASVRRCSSFPNKGNQDHTVARGSYSLPVAQLRFSSQNEKLSPTLSAGSVSTTFGNSVSNGAVVSSKTRIRWTKDLHEKFVECVNRLGGADQATPKAILKMMDTDGLTIFHVKSHLQKYRIAKFIPEPGQGSLNIKCCPVSGKSDKRTHTKDVHQLDVKTGLQIREALKLQLDAQRCLHEQLEIQRKLQLRIEEQGRELKKMFDQQQKSSNNLLNTQKSATDETTMCHKSGEVSVSQGVNNSFFPSKISPSQ 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr2478g00001 434 Gene3D - 248 307 - -
Mupr2478g00001 434 Pfam MYB-CC type transfactor, LHEQLE motif 344 391 IPR025756 -
Mupr2478g00001 434 SUPERFAMILY Homeodomain-like 247 303 IPR009057 -
Mupr2478g00001 434 Coils Coil 347 367 - -
Mupr2478g00001 434 FunFam Myb family transcription factor 248 306 - -
Mupr2478g00001 434 NCBIfam myb-like DNA-binding domain, SHAQKYF class 249 304 IPR006447 GO:0003677
Mupr2478g00001 434 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 243 412 IPR044848 GO:0003700
Mupr2478g00001 434 Pfam Myb-like DNA-binding domain 253 302 IPR001005 -
Mupr2478g00001 434 MobiDBLite consensus disorder prediction 386 405 - -
Mupr2478g00001 434 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 248 306 IPR017930 -
Mupr2478g00001 434 MobiDBLite consensus disorder prediction 387 405 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr2478g00001 Mupr-Chr2478 7224 9543 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr2478g00001 232 388 G2-like Transcription Factor Family AT4G28610 54.430 5.79e-48 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Mupr2478g00001 Myb_DNA-binding 4.1e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr2478g00001 - - ccaj:109797364 644.81