Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr2475g00008 ATGAGAATCATAATACTCTTCTTCCTGGTAGCACCAACATCTTTCGTGTTCTGCACCACATACAATCAATCCACACCACCACCCTCAGTGCCTCATGGCGCGTCCAATAAGGCCACCGTCGGCGGAATACTTCCCGTGTTACTCACGTTCTTCGTATTCGCCTTCTTCATCACCGCCTTCTGCTACGTCTACATTCTCTACTGCTTCCCCCAACAACACGAGCTTCCGCAGACCACGCGCACGACCCGCGGAATCGATCCGCGCGTGCTGGCCACGTGTCCCGTCATGTCGTACTCCGCGGCAGCGAAGAACCTCAAGTTCAACGCGGCGTTGCAGTGCGCCGTATGTTTGGCGGAGTTCGGCGACGCCGACGCGCTCCGCTTGCTGCCGAAGTGCGGCCACGCGTTCCACTCGGCCTGCATCGACGCGTGGCTGGCCTCGCACGTGACCTGCCCCGTGTGTCGCGGCGAGGTAAGCGTGGAAATCGAGGGGGAGGCACGTGCGCGACACGTGTTGGATGAAAGTTCGGTGAGAGGCTTTGGGGTGCTTTTGAGGTCACATTCGACGGGGCACTCTATGGAGAGGCTCGCTCTGAGGTTGTCTGAGGAAGTGATGAAGAAGATTCTGGAAGATGGTGAACGTGGGAGTGTGACGACGATGAAGCGTTCGGCTAGTTACGACGTCGTTTTACGGAGCTGGGAAGGGGGTGAAGGTAGTATTTCTAGTAAAGGGGAGAGTAATAATAATAATAACCGGTGGGTTTTATCGTTGACACCTCCGTTTGTTTATCGCGGTTCGGGTTCGTCTAATGTGGGACCAGCGTCCTCGGGGATTCCGAGGATGTTGGGATTTGGTTATGCGGTGTTATTTGGGGCAATGGACCCAATAATGGGTCTTCCATTACGGGTTTGGAATGAGAGGCCAATTCATCAACGATATCGTGGCTTGTACTGTTGTGAGGAGAGAAATATAATACCAGAGGAATGGTGTGATCACACTGGCAACATAAATTTGTAA 1017 0.5388 MRIIILFFLVAPTSFVFCTTYNQSTPPPSVPHGASNKATVGGILPVLLTFFVFAFFITAFCYVYILYCFPQQHELPQTTRTTRGIDPRVLATCPVMSYSAAAKNLKFNAALQCAVCLAEFGDADALRLLPKCGHAFHSACIDAWLASHVTCPVCRGEVSVEIEGEARARHVLDESSVRGFGVLLRSHSTGHSMERLALRLSEEVMKKILEDGERGSVTTMKRSASYDVVLRSWEGGEGSISSKGESNNNNNRWVLSLTPPFVYRGSGSSNVGPASSGIPRMLGFGYAVLFGAMDPIMGLPLRVWNERPIHQRYRGLYCCEERNIIPEEWCDHTGNINL 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr2475g00008 338 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 71 160 IPR013083 -
Mupr2475g00008 338 CDD RING-H2_EL5-like 112 155 - -
Mupr2475g00008 338 SUPERFAMILY RING/U-box 108 161 - -
Mupr2475g00008 338 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 26 185 - -
Mupr2475g00008 338 FunFam E3 ubiquitin-protein ligase ATL6 73 161 - -
Mupr2475g00008 338 SMART ring_2 113 154 IPR001841 -
Mupr2475g00008 338 ProSiteProfiles Zinc finger RING-type profile. 113 155 IPR001841 -
Mupr2475g00008 338 Pfam Ring finger domain 112 155 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr2475g00008 Mupr-Chr2475 92172 93262 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr2475g00008 5 277 Rapid Response to Elicitors AT3G05200 29.358 4.15e-32 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr2475g00008 K10664 - gmx:102665105 320.472