Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr2475g00003 ATGGGCGTGAAGAATTTGTGGGATGTCCTCGAATCGTGCAAGAAAACGGTTCCCCTCCACCACCTACAGAACAAGCGGGTGTGCGTGGACCTCTCCTGCTGGATGGTGCAGCTTCACAGCGTGAGCAAGTCTCACGCCTGCGTCAAGGAGAAAGTGTACCTCAGAGGACTCTTTCACCGACTCAGAGCACTCATTGCGCTAAATTGCAGCGTCGTGTTCGTAGCAGATGGATCAATTCCTGCCATCAAATTATCAACCTATAGGCGTCGTTTAAATGTTGGAAAGGAGGTAGCACAAAGCGAAACTAACTTACAGAAAGTGACTTCATTAAGGAGAAACATGGGGTCTGAGTTTTCTTGCATGATCAAAGAGGCTAAAGTCTTGGGGATGGCTCTTGGCATTTCTTGTTTGAATGGGATTGAAGAAGCTGAAGCTCAGTGTGCTTTGTTGAACTTTGAATCATTATGTGATGGATGTTTCAGTTCAGATTCAGACATATTCCTTTTTGGTGCAAGGACAGTTTATAGGGATATCTGCCTTGGAGATGGTGGATATGTTGTTTGTTATGAGATGACGGATATTGAAAGAAAACTTGGATTTGGAAGGGACTCATTGATTGCTCTCTCCTTGCTTCTTGGCAGTGACTATTATCAAGGAGTTCATGGTCTGGGTCCAGAGTCGGCTTGTCAGATTGTCAAATCAATTGGGGACAAATATGTTCTTAAAAAATTCGCTTCTGAAGGACTTGAATGGGTGAAAAAAAGAAAAGGAGGTGCTAATGATTTACGGCAGGATGATATCATTTTACAAGTAATTAATGCTTATATGAAGCCAAAATGTCACTCAGCCGATTCAGATATTGTGCACAAGGCTCTTGCTCAATATCTGTTTCAACGTACTAAACTTCAGCAGATATGTGCTGAATTCTTTCAGTGGTCTTCAGAGAAAACAGATGGGTATATCCTTCCAAGTATAGCTGAAAGAGATTTACGACGATTTGCCAATTTGCGTTTAACTTCATCTGAAGTTGAATTGAACCTTCCTTTACATGAGATCCCTGTGAAGTGTCCTGTGTCAGAAATCATTAAGAGCCGAAGAATTCAAGGGAGAGAATGCTATGAGGTTTCTTGGGAAGGAATGGATGGACTTGAAACTTCAATAGTACCTGCAGATCTTATAGAAAGTGCCTGTCGTGAGAAGATTTTGGAGTTCGAGGAAAGAAAAGCTCAACGGAAGAAACAAAATATTCCGAATAGAAGAAGACCAAAGAAAAAGGAAATAATGTCATCTGTGCCTGAGCTTGATCTAAAACTTCAGAATTTGTTGCTTGATAATAATTTGAGAGACCAAGCCAACTTCAATGCCTCTGATTCTTCAACAAAGATATCAAGGATTACAACTGCTATGGCTGAAGCAGATATGAATGGCGCAGACTTGTTGCACCAATCACACGACATAGAACACACTGGGTTGATTCAAAATGTTAGCAGCATAGATAGCAATGAGGCAGTTTCCAGTATAGGTAAAAATGAGATCATAGATCTTCTGAGCCCTTCCCCACCTAAGAAATCCATTTTTTCCTCAAAATGTCAGCAATCAAGTGACCAACATATTGAAGTGATTAATTTGAGTGATTCAGAAAATGACATGTCCATTGAACACAAGCAGAAAGCGAAGGAGCTGAGGTTGTTCTTAACTAGTATTAGGAATGAAATTCATTGA 1722 0.4077 MGVKNLWDVLESCKKTVPLHHLQNKRVCVDLSCWMVQLHSVSKSHACVKEKVYLRGLFHRLRALIALNCSVVFVADGSIPAIKLSTYRRRLNVGKEVAQSETNLQKVTSLRRNMGSEFSCMIKEAKVLGMALGISCLNGIEEAEAQCALLNFESLCDGCFSSDSDIFLFGARTVYRDICLGDGGYVVCYEMTDIERKLGFGRDSLIALSLLLGSDYYQGVHGLGPESACQIVKSIGDKYVLKKFASEGLEWVKKRKGGANDLRQDDIILQVINAYMKPKCHSADSDIVHKALAQYLFQRTKLQQICAEFFQWSSEKTDGYILPSIAERDLRRFANLRLTSSEVELNLPLHEIPVKCPVSEIIKSRRIQGRECYEVSWEGMDGLETSIVPADLIESACREKILEFEERKAQRKKQNIPNRRRPKKKEIMSSVPELDLKLQNLLLDNNLRDQANFNASDSSTKISRITTAMAEADMNGADLLHQSHDIEHTGLIQNVSSIDSNEAVSSIGKNEIIDLLSPSPPKKSIFSSKCQQSSDQHIEVINLSDSENDMSIEHKQKAKELRLFLTSIRNEIH 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr2475g00003 573 CDD CD_CSD 358 406 - -
Mupr2475g00003 573 ProSiteProfiles Chromo and chromo shadow domain profile. 356 416 IPR000953 -
Mupr2475g00003 573 SMART xpgn3 1 97 IPR006085 GO:0004518
Mupr2475g00003 573 FunFam Flap endonuclease GEN-like 1 200 257 - -
Mupr2475g00003 573 Pfam XPG N-terminal domain 1 91 IPR006085 GO:0004518
Mupr2475g00003 573 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 506 IPR006084 -
Mupr2475g00003 573 Gene3D - 2 199 - -
Mupr2475g00003 573 Pfam XPG I-region 133 215 IPR006086 GO:0004518
Mupr2475g00003 573 SUPERFAMILY PIN domain-like 2 215 IPR029060 -
Mupr2475g00003 573 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 150 170 IPR006084 -
Mupr2475g00003 573 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 71 90 IPR006084 -
Mupr2475g00003 573 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 205 220 IPR006084 -
Mupr2475g00003 573 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 129 146 IPR006084 -
Mupr2475g00003 573 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 24 38 IPR006084 -
Mupr2475g00003 573 Gene3D - 355 419 - -
Mupr2475g00003 573 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 200 336 IPR036279 -
Mupr2475g00003 573 Gene3D - 201 256 - -
Mupr2475g00003 573 SMART xpgineu 130 200 IPR006086 GO:0004518
Mupr2475g00003 573 SUPERFAMILY Chromo domain-like 357 412 IPR016197 -
Mupr2475g00003 573 CDD PIN_GEN1 2 198 - -
Mupr2475g00003 573 FunFam flap endonuclease GEN-like 2 2 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr2475g00003 Mupr-Chr2475 8965 15895 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr2475g00003 1 236 Core DNA Replication Machinery Family AT5G26680 24.419 5.35e-11 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr2475g00003 K15338 - gmx:100806919 994.956