Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr2474g00003 ATGGCCTCCATTCTTCAAGCTTGTACCATGTTGTTGGTTGCATTTACAATGGGAGAGCAAGCAGTAGCTGCGGGAATATTTCGACCTAGTCAATGGGCTCTTGCCCATGCCACCTTTTACGGTGATGAGACTGCTTCTGCCACTATGGGAGGAGCATGCGGATACGGGAATTTGTTTCAAAATGGTTACGGGACAGATACGGTGGCTCTAAGTTCAACGCTGTTCAACAACGGTTATGCGTGTGGAACTTGTTTCCAGATAAAATGCTATGAATCAAGTGCATGTTACAAAAATGTGGCCTACACCACAGTGACTGCCACCAATCTTTGTCCTCCTAATTGGTCTCAACCGTCTGATAATGGAGGGTGGTGCAACCCACCACGAGTGCATTTTGATATGGCCAAGCCTGCCTTCATGAAAATTGCGCAGTGGAAGGCTGGGATCGTCCCAGTTATGTACCGCAGAGTGCCATGCATAAGGAGGGGAGGGGTTCGATTATCTTTCCAAGGAAATGGGTACTGGCTATTGGTATACGTGATGAACGTGGGAGGTGGAGGAGATATTTCAAGCATGTGGGTGAAAGGAAGCAGAAGTGGATGGATTAGCATGAGCCATAACTGGGGGGCTTCCTATCAAGCATTTGCAACTCTTGCTGGACAAGCTCTTTCTTTTAAAATTACTTCATACACCACTAAGGAGACTATTATTGCATGGAATGTTGCTCCTTCTAATTGGAATGTCGGACTAACTTATTCCACCACCGTTAACTTCCGCTAA 777 0.4633 MASILQACTMLLVAFTMGEQAVAAGIFRPSQWALAHATFYGDETASATMGGACGYGNLFQNGYGTDTVALSSTLFNNGYACGTCFQIKCYESSACYKNVAYTTVTATNLCPPNWSQPSDNGGWCNPPRVHFDMAKPAFMKIAQWKAGIVPVMYRRVPCIRRGGVRLSFQGNGYWLLVYVMNVGGGGDISSMWVKGSRSGWISMSHNWGASYQAFATLAGQALSFKITSYTTKETIIAWNVAPSNWNVGLTYSTTVNFR 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr2474g00003 258 CDD DPBB_EXPA_N 31 158 - -
Mupr2474g00003 258 Pfam Lytic transglycolase 67 153 IPR009009 -
Mupr2474g00003 258 PRINTS Expansin signature 239 255 IPR002963 GO:0009664
Mupr2474g00003 258 PRINTS Expansin signature 62 76 IPR002963 GO:0009664
Mupr2474g00003 258 PRINTS Expansin signature 121 138 IPR002963 GO:0009664
Mupr2474g00003 258 PRINTS Expansin signature 162 174 IPR002963 GO:0009664
Mupr2474g00003 258 PRINTS Expansin signature 174 195 IPR002963 GO:0009664
Mupr2474g00003 258 PRINTS Expansin signature 102 112 IPR002963 GO:0009664
Mupr2474g00003 258 PRINTS Expansin signature 138 151 IPR002963 GO:0009664
Mupr2474g00003 258 PANTHER EXPANSIN-A15 11 253 IPR002963 GO:0009664
Mupr2474g00003 258 SUPERFAMILY PHL pollen allergen 160 252 IPR036749 -
Mupr2474g00003 258 Gene3D - 19 158 IPR036908 -
Mupr2474g00003 258 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 50 163 IPR007112 -
Mupr2474g00003 258 SMART dpbb_1 67 153 IPR007112 -
Mupr2474g00003 258 Pfam Expansin C-terminal domain 164 242 IPR007117 -
Mupr2474g00003 258 PRINTS Expansin/Lol pI family signature 71 89 IPR007118 GO:0005576
Mupr2474g00003 258 PRINTS Expansin/Lol pI family signature 239 253 IPR007118 GO:0005576
Mupr2474g00003 258 PRINTS Expansin/Lol pI family signature 49 67 IPR007118 GO:0005576
Mupr2474g00003 258 PRINTS Expansin/Lol pI family signature 200 214 IPR007118 GO:0005576
Mupr2474g00003 258 PRINTS Expansin/Lol pI family signature 31 46 IPR007118 GO:0005576
Mupr2474g00003 258 PRINTS Expansin/Lol pI family signature 146 162 IPR007118 GO:0005576
Mupr2474g00003 258 Gene3D - 163 258 IPR036749 -
Mupr2474g00003 258 SUPERFAMILY Barwin-like endoglucanases 31 181 IPR036908 -
Mupr2474g00003 258 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 173 253 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr2474g00003 Mupr-Chr2474 16932 17917 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr2474g00003 9 258 Expansin Gene Family AT1G12560 68.400 3.12e-128 362
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr2474g00003 - - gmx:100807807 504.212