Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr2457g00010 ATGGCTCCAATTTCATTCTTCCTTATTCTTTTTGCTCTTTCTCTTCTGACACCCAATTTTGTTTCCTCCTCCGCAGTTCCACACCCTGAATTAGTGGTACAAGAGGTACAAAGAAGCATTAATGCCTCTAGAAGAAACCTGGGTTATTTATCATGCGGAACGGGAAACCCCATTGACGATTGCTGGCGCTGCGACCCAAACTGGGAAAACAACCGTCAAAGACTAGCCGATTGCGCCATTGGGTTCGGCAAGGACGCAATCGGGGGAAGAAATGGTCGAATCTATGTGGTGACCGATTCCGGTGACGACGACGCGGTGAACCCAAAGCCAGGAACTATACGGTACGCAGCCATACAAGACGAGCCACTGTGGATCATCTTCAAGCGGGACATGGTTATCACGCTGAAGCAAGAGCTCCTGGTGAACTCGTTCAAGACCATTGACGGAAGGGGTGCGAGCGTCCACATCGCCGGCGGGGGGTGCATCACCATCCACTACGTCACCAATGTTATCATCCACGGCGTTCACATTCACGACTGCAAGCCCACCGGGAACACCGACATCAGAGACTCGCCTCGCCACTTCGGGTTCTGGACCGTGTCTGACGGCGACGGAGTCTCCATCTTTAACTCTCAGCATGTGTGGGTCGACCACTGCTCGCTGTCTAACTGCCGCGATGGCCTCATTGATGCCATTCATGGATCCACTGCCATTACCATCTCCAACAATTACATGACCCATCATGACAAGGTCATGCTTTTGGGACACAGTGATTCGTACACCCAGGACAAGAACATGCAGGTCACTATTGCCTTCAATCATTTTGGAGAAGGTCTTGTACAAAGAATGCCCAGGTGTAGACACGGGTATTTCCATGTGGTGAACAACGACTACACTCACTGGGAAATGTATGCCATTGGTGGGAGTGCGAACCCAACCATCAATAGCCAAGGGAACAGGTTTCTTGCCCCAGACATAAGGTTCAGCAAGGAGGTAACCAAGCATGAGGATGCTCCACAGAGTGAATGGATGAGGTGGAATTGGAGATCAGAGGGTGATATGTTCTTGAATGGAGCATACTTCAGGCAATCTGGTGCTGGTGCTTCTTCTAGCTATGCTAGAGCCTCAAGTCTTAGTGCAAGACCATCTTCTCTTGTTGGTTCCATGACCATCACTGCTGGTGTACTTAACTGTAGAAAGGGCACCCGTTGCTGA 1215 0.5045 MAPISFFLILFALSLLTPNFVSSSAVPHPELVVQEVQRSINASRRNLGYLSCGTGNPIDDCWRCDPNWENNRQRLADCAIGFGKDAIGGRNGRIYVVTDSGDDDAVNPKPGTIRYAAIQDEPLWIIFKRDMVITLKQELLVNSFKTIDGRGASVHIAGGGCITIHYVTNVIIHGVHIHDCKPTGNTDIRDSPRHFGFWTVSDGDGVSIFNSQHVWVDHCSLSNCRDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFLAPDIRFSKEVTKHEDAPQSEWMRWNWRSEGDMFLNGAYFRQSGAGASSSYARASSLSARPSSLVGSMTITAGVLNCRKGTRC 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr2457g00010 404 PANTHER PECTATE LYASE 18-RELATED 25 402 IPR045032 GO:0030570
Mupr2457g00010 404 SUPERFAMILY Pectin lyase-like 39 398 IPR011050 -
Mupr2457g00010 404 FunFam Pectate lyase 55 397 - -
Mupr2457g00010 404 Pfam Pectate lyase 137 321 IPR002022 -
Mupr2457g00010 404 SMART amb_all 130 327 IPR002022 -
Mupr2457g00010 404 PRINTS Pollen allergen Amb family signature 78 95 IPR018082 -
Mupr2457g00010 404 PRINTS Pollen allergen Amb family signature 202 223 IPR018082 -
Mupr2457g00010 404 PRINTS Pollen allergen Amb family signature 102 127 IPR018082 -
Mupr2457g00010 404 PRINTS Pollen allergen Amb family signature 375 398 IPR018082 -
Mupr2457g00010 404 PRINTS Pollen allergen Amb family signature 282 301 IPR018082 -
Mupr2457g00010 404 PRINTS Pollen allergen Amb family signature 138 154 IPR018082 -
Mupr2457g00010 404 PRINTS Pollen allergen Amb family signature 346 370 IPR018082 -
Mupr2457g00010 404 PRINTS Pollen allergen Amb family signature 304 323 IPR018082 -
Mupr2457g00010 404 Gene3D - 55 397 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr2457g00010 Mupr-Chr2457 48686 51127 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr2457g00010 1 404 Polysaccharide Lyase AT4G24780 77.396 0.0 630
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr2457g00010 K01728 - gmx:100794814 771.155