Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr2439g00003 ATGATCATTCAATTGAGGCAGGAGCTCTTGATTTCCTCTAAGACTATTGAGGGTCGTGGTGCAAACATGCAGATCAAGAATGGTGTACGGAACAATGTCAACATCCATGGAATTCACATCAAGCAAATCGTGCCTACAGATAGCAGCATGATTAAGGACTCCTACAACCACTTTGGGTTGAGGACAAGGAGCGACGGTGATGACGATGCCGTCTCCATATTTGGAGCCTTCAATATTTGTATAAATCGTATTTCGATCGCCACCACCATCCCAAATTGCCACATGACTAAACATAACGATGTGATGCTATTAGGGGCCAGATAC 324 0.4414 MIIQLRQELLISSKTIEGRGANMQIKNGVRNNVNIHGIHIKQIVPTDSSMIKDSYNHFGLRTRSDGDDDAVSIFGAFNICINRISIATTIPNCHMTKHNDVMLLGARY 108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr2439g00003 108 Gene3D - 1 108 IPR012334 -
Mupr2439g00003 108 PANTHER PECTATE LYASE 18-RELATED 1 106 IPR045032 GO:0030570
Mupr2439g00003 108 SUPERFAMILY Pectin lyase-like 1 106 IPR011050 -
Mupr2439g00003 108 PRINTS Pollen allergen Amb family signature 7 23 IPR018082 -
Mupr2439g00003 108 PRINTS Pollen allergen Amb family signature 67 88 IPR018082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr2439g00003 Mupr-Chr2439 5711 6052 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr2439g00003 1 107 Polysaccharide Lyase AT1G14420 47.287 5.52e-27 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr2439g00003 K01728 - gmx:100810615 125.176