Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr2424g00003 ATGTCGAACCCTCAAAATCAAAAACCATGGAAGGCGGAGTACGCGAAGTCGGGGCGATCGTCATGCAGGACGTGCAAGAGCCCCATTGCCAGCGAAACGCTGCGTCTCGGCAAGATGGTTCAATCCAGCAAATTCGATGGCCTCATGCCCATGTGGCATCATGCTGCTTGCATATTGAAGAAAGCCAATCAGATAAAATTAGTTGAAGATGTTGAAAACTTAGAGTCGCTTCGTTGGGAGGATCAGCAGAAGATCAGAAAATACATTGAGAGTGGGGGTGGGGCCGGGGGCGCCACAAAGTCAAATTCAAGTGCTGTCAAAGATACTGAAGGTGGTATTGAAGTTTCGCAAACTTCTCGCGCCACCTGCAGGGATTGCAGTCAAAAGATTATCAAAGGAGAGGTTCGTATATCTACTAAGCCTGATGGTCAAGGTGCTAAAGGTTTGGCTTGGCATCATGCCAAGTGTCTCCTGGAACTATCACCATCAATTAAAGTGGATAAGTTGTCTGGATGGAATAATCTCTCATCTTCTGATCAATCGGCTGTCAGTGACATGGCTAAGAAGGGTTGTTCTATGAATAAGGGGGGTGGTAGTGGTACAAACATTAAGACTGAAGAGGGTAAAGAATCCACTCAACACACTTCCAAAGGTGGCATTAAACGGGGGAAGGATGCCGATGGTGAGCGGAAATCAAAAGTTGCTAAGGCCAAGGGAGAAATGTCTGCGGGCAGTGCAGTGTCAGTGAAGAATTATAATGTACCAGGGGAAGCATGTGATCTGGAGAATAGACTGGAGGCTCAGAGCAAAGAACTCTGGGCTTTGAAGGATGATCTCAAAAAGCATGCGGCAACAATAGAGTTGCGTGAAATGCTGGAAGCTAATGGTCAAGATTCAACAGGATCAGAACTTGATTTGCGTGACCGCTGGTATGCTGATGGAATGATGTTTGGAGGACTTGGTCTTTGCCCAATATGTTCTGGCTTTCTGCGATATTCTGGAGGAATGTACCGGTGCAATGGATACATTTCTGAGTGGAGTAAATGTTCTTACTCTACCTGTGAACCAAAGCGTATTGAAGCGAAGTGGAAAATCCCAGAGGAAACAAATAATCAGTACCTTAAAAAATGGTTCAAATCTCAAAAAGGGAAGAAACCAGTTAGGATATTGCCTCTTCCATCACCAAGGAAATCTGCTGAAAGTCAAATTACTGCTAGTCAGCATCAATCATCAAACAGTGAAAATTTGCAAGATTTGAAAGTTGCTATCTGTGGATTACCTAATGAATCTATTTATTTTGTACTCATCTTCTATGAGGTGGTTTTACAGGAGAAATGGAAACGCAAAATTGATGGCATAGGTGGGGTGTTTCATGCAAAAGTAAAGAAAGATACTAACTGCTTGGTGGTTGGTGGAGCACTCAATGATGAGGCTGAGATGCGGAAGGCAAGGAGGATGAAGATACCAATTGTCAGAGAGGACTACTTGATTGACTGCATAGAAAGAAAGAAGAGACTTCCATTTGATATGTACAAGGTTGAAAAGATTGGCGAGGCTTCTAGCATGGTCACCATTAAAGTGAAGGGACACAGTGCTGTTCACGAGGCTTCTGGCCTACAGGATTCTGGCCACATACTTGAGGAAGGGAAAAGCATATATAACACAACTTTGAATATGTCTGATTTGTCTACTGGTATTAACAGCTACTACATTCTCCAGATAATCCAAGAAGATAAGGGGTCAGACTGCTATGTCTTTCGTAAATGGGGACGAGTGGGAAATGACAAGATTGGAGGAAATAAAGTGGAAGAAATGTCAAAATCTGATGCAATCTGTGAATTCAAACGATTATTCTATGAGAAAACTGGAAACCCTTGGGAGGCGTGGGAACAAAAGACTATTCAGAAGCAACCTGGAAGATTTTTCCCATTGGATATTGATTATGGAGTTAACAAACAGATCTCAAAAAAGAAAACAAATATTACTGACAGCATACTACCCCATCCACTAATAGAATTGATGAAGATGCTCTTTAATGTAGAAACATACAGAGCTGCCATGATGGAATTTGAGATTAATATGTCTGAAATGCCACTTGGGAAACTGAGCAAAAGCAATATCCAAAAGGGGTTTGAAGCATTGACAGAGATACAGAATCTGTTTAAAACTAGCAATTCCGATCCATCAGTCAAGGAAAGCTTGCTTATTAATGCCAGCAACCGATTCTTCACTGTGATCCCATCTATTCATCCACATATTATTAGGGATGAGGATGATTTTAAGTCCAAGGTGAAAATGTTAGAAGCCCTTCAAGACATTGAAATAGCCTCAAGATTAGTTGGCTTTGATGCCAACAGTGATGATTCAATTGATGATAACTATAAGAAGCTCCACTGTGATATATCTCCACTTCCTCATGATAGTGAAGATTTTTGTTTAATTGAGAAGTTTCTTCATAATACTCATGCCCCCACACATACGGACTGGAGTCTTGAGCTTGAAGAAGTTTTTTCACTTGAAAGGGAAGGTGAATTTGATAAGTTTGCTCCTTACAGGGATAAACTTGGCAACAGAATGCTCCTATGGCATGGTTCTAGGTTGACAAACTTTGTGGGCATTCTTAGCCAGGGACTCAGAATTGCACCTCCTGAAGCCCCGGCAACTGGCTATATGTTTGGCAAAGGGGTTTACTTCGCTGACCTGGTCAGCAAAAGTGCTCAGTATTGCTTCACTGATAAGAAAAATCCTGTTGGTCTAATGCTTTTGAGTGAAGTTGCACTTGGAAATGTCTATGAACTCAAGAAAGCTAAGTATATGGATAAACCTCCAGAAGGAAAGCATTCTACTAAAGGACTGGGCAAGAAAATGCCTCATGAATCAGAATTTGTAAAGTGGAAGGGTGATGTCACTGTTCCTTGTGGCAAACCAGTGTCATCAAATGTCAAGGCTTCTGAGCTCATGTACAATGAGTATATTGTTTATGATACTGCTCAAATTAATTGGGATTTTTTTATATTGAATGGAAATGGGTCTGGCTCTGGCTCTCCTTGCGGGGCATGCAAGTTCCTCAGAAGAAAGTGTGCAGTTGACTGCATCTTTGCACCTTACTTTTGCTCCGAACAAGGCCCTGCTAGATTTGCGGCCATACACAAGGTGTTTGGCGCCAGCAACGTTTCCAAGTTGCTTTTGCATATACCTGCCCATGATCGTTGTGAGGCTGTTGTCACGATTGCTTATGAGGCCCAGGCTCGTATCAGAGATCCTGTCTATGGCTGTGTCTCTCACATTTTCGCTTTACAACAACAGGTGGCATGCTTGCAGGCACAGCTGATGCAAGTGAAGGCTCAGCTATCTCAGAACCTAATGGAGTCCAGGAACATAGAGAACCATCAGTGGCCAGGGAATAATAACAGTGTTGCAGGACAAGCAATAAGTCATCCATTTTGTCCCACTTACATGAACCCTATATCTCCTCAAAGCTCTCTTGAGTCCATTGATCACAGCAGCATCAATGATGGAATGGGCATGCAAGATATACAAAGCAGAGAGGATTTCCCATTCCAAGCTTCTTCCAAGGAAAGATCATACAACAATAATGACTTGGGGGAGCTGCAAGAACTGGCACTCAGGATGATGAGGAACTGA 3645 0.4261 MSNPQNQKPWKAEYAKSGRSSCRTCKSPIASETLRLGKMVQSSKFDGLMPMWHHAACILKKANQIKLVEDVENLESLRWEDQQKIRKYIESGGGAGGATKSNSSAVKDTEGGIEVSQTSRATCRDCSQKIIKGEVRISTKPDGQGAKGLAWHHAKCLLELSPSIKVDKLSGWNNLSSSDQSAVSDMAKKGCSMNKGGGSGTNIKTEEGKESTQHTSKGGIKRGKDADGERKSKVAKAKGEMSAGSAVSVKNYNVPGEACDLENRLEAQSKELWALKDDLKKHAATIELREMLEANGQDSTGSELDLRDRWYADGMMFGGLGLCPICSGFLRYSGGMYRCNGYISEWSKCSYSTCEPKRIEAKWKIPEETNNQYLKKWFKSQKGKKPVRILPLPSPRKSAESQITASQHQSSNSENLQDLKVAICGLPNESIYFVLIFYEVVLQEKWKRKIDGIGGVFHAKVKKDTNCLVVGGALNDEAEMRKARRMKIPIVREDYLIDCIERKKRLPFDMYKVEKIGEASSMVTIKVKGHSAVHEASGLQDSGHILEEGKSIYNTTLNMSDLSTGINSYYILQIIQEDKGSDCYVFRKWGRVGNDKIGGNKVEEMSKSDAICEFKRLFYEKTGNPWEAWEQKTIQKQPGRFFPLDIDYGVNKQISKKKTNITDSILPHPLIELMKMLFNVETYRAAMMEFEINMSEMPLGKLSKSNIQKGFEALTEIQNLFKTSNSDPSVKESLLINASNRFFTVIPSIHPHIIRDEDDFKSKVKMLEALQDIEIASRLVGFDANSDDSIDDNYKKLHCDISPLPHDSEDFCLIEKFLHNTHAPTHTDWSLELEEVFSLEREGEFDKFAPYRDKLGNRMLLWHGSRLTNFVGILSQGLRIAPPEAPATGYMFGKGVYFADLVSKSAQYCFTDKKNPVGLMLLSEVALGNVYELKKAKYMDKPPEGKHSTKGLGKKMPHESEFVKWKGDVTVPCGKPVSSNVKASELMYNEYIVYDTAQINWDFFILNGNGSGSGSPCGACKFLRRKCAVDCIFAPYFCSEQGPARFAAIHKVFGASNVSKLLLHIPAHDRCEAVVTIAYEAQARIRDPVYGCVSHIFALQQQVACLQAQLMQVKAQLSQNLMESRNIENHQWPGNNNSVAGQAISHPFCPTYMNPISPQSSLESIDHSSINDGMGMQDIQSREDFPFQASSKERSYNNNDLGELQELALRMMRN 1214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr2424g00003 1214 FunFam Poly [ADP-ribose] polymerase 798 1008 - -
Mupr2424g00003 1214 CDD WGR_PARP1_like 543 648 - -
Mupr2424g00003 1214 Pfam Lateral organ boundaries (LOB) domain 1016 1114 IPR004883 -
Mupr2424g00003 1214 Gene3D - 653 797 IPR036616 GO:0003950
Mupr2424g00003 1214 SUPERFAMILY WGR domain-like 521 646 IPR036930 -
Mupr2424g00003 1214 SUPERFAMILY BRCT domain 442 513 IPR036420 -
Mupr2424g00003 1214 ProSiteProfiles PARP alpha-helical domain profile. 663 781 IPR004102 GO:0003950
Mupr2424g00003 1214 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 112 196 - -
Mupr2424g00003 1214 Gene3D - 798 1007 - -
Mupr2424g00003 1214 SUPERFAMILY Domain of poly(ADP-ribose) polymerase 665 798 IPR036616 GO:0003950
Mupr2424g00003 1214 ProSiteProfiles WGR domain profile. 542 641 IPR008893 -
Mupr2424g00003 1214 Gene3D - 2 108 IPR036957 GO:0003677|GO:0008270
Mupr2424g00003 1214 SUPERFAMILY ADP-ribosylation 797 1006 - -
Mupr2424g00003 1214 SMART WGR_cls 553 636 IPR008893 -
Mupr2424g00003 1214 Pfam PADR1 (NUC008) domain 312 358 IPR012982 GO:0008270
Mupr2424g00003 1214 Pfam BRCA1 C Terminus (BRCT) domain 444 500 IPR001357 -
Mupr2424g00003 1214 ProSiteProfiles Generated from MSF file: '/work/www/psmaker/tmp/pfmake.input.483415'. 252 392 IPR047572 GO:0008270
Mupr2424g00003 1214 Gene3D - 247 318 - -
Mupr2424g00003 1214 ProSiteProfiles LOB domain profile. 1015 1117 IPR004883 -
Mupr2424g00003 1214 Gene3D - 109 195 IPR036957 GO:0003677|GO:0008270
Mupr2424g00003 1214 ProSiteProfiles BRCT domain profile. 411 513 IPR001357 -
Mupr2424g00003 1214 SMART BRCT_7 425 503 IPR001357 -
Mupr2424g00003 1214 SMART PADR1_2 306 360 IPR012982 GO:0008270
Mupr2424g00003 1214 ProSiteProfiles Zinc finger poly(ADP-ribose) polymerase (PARP)-type profile. 111 187 IPR001510 GO:0003677|GO:0008270
Mupr2424g00003 1214 FunFam Poly [ADP-ribose] polymerase 4 104 - -
Mupr2424g00003 1214 Pfam WGR domain 553 631 IPR008893 -
Mupr2424g00003 1214 MobiDBLite consensus disorder prediction 186 239 - -
Mupr2424g00003 1214 PANTHER DNA LIGASE 112 1004 - -
Mupr2424g00003 1214 Gene3D BRCT domain 395 516 IPR036420 -
Mupr2424g00003 1214 SMART zf_PARP_3 13 90 IPR001510 GO:0003677|GO:0008270
Mupr2424g00003 1214 SMART zf_PARP_3 114 188 IPR001510 GO:0003677|GO:0008270
Mupr2424g00003 1214 FunFam Poly [ADP-ribose] polymerase 409 522 - -
Mupr2424g00003 1214 MobiDBLite consensus disorder prediction 207 237 - -
Mupr2424g00003 1214 MobiDBLite consensus disorder prediction 389 411 - -
Mupr2424g00003 1214 Gene3D - 319 379 IPR038650 -
Mupr2424g00003 1214 CDD parp_like 666 1000 - -
Mupr2424g00003 1214 Pfam Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region 13 89 IPR001510 GO:0003677|GO:0008270
Mupr2424g00003 1214 Pfam Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region 114 185 IPR001510 GO:0003677|GO:0008270
Mupr2424g00003 1214 FunFam Poly [ADP-ribose] polymerase 656 797 - -
Mupr2424g00003 1214 MobiDBLite consensus disorder prediction 90 118 - -
Mupr2424g00003 1214 FunFam Poly [ADP-ribose] polymerase 105 217 - -
Mupr2424g00003 1214 Pfam Poly(ADP-ribose) polymerase catalytic domain 808 1005 IPR012317 GO:0003950
Mupr2424g00003 1214 ProSiteProfiles PARP catalytic domain profile. 788 1016 IPR012317 GO:0003950
Mupr2424g00003 1214 MobiDBLite consensus disorder prediction 397 411 - -
Mupr2424g00003 1214 Pfam Poly(ADP-ribose) polymerase, regulatory domain 664 794 IPR004102 GO:0003950
Mupr2424g00003 1214 ProSiteProfiles Zinc finger poly(ADP-ribose) polymerase (PARP)-type profile. 10 93 IPR001510 GO:0003677|GO:0008270
Mupr2424g00003 1214 MobiDBLite consensus disorder prediction 96 118 - -
Mupr2424g00003 1214 FunFam Poly [ADP-ribose] polymerase 319 380 - -
Mupr2424g00003 1214 Coils Coil 1096 1116 - -
Mupr2424g00003 1214 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 7 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr2424g00003 Mupr-Chr2424 10285 27065 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr2424g00003 1007 1214 AS2 family AT2G42430 55.785 1.49e-71 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Mupr2424g00003 PARP 1.3e-68 CL0084
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr2424g00003 K24070 - gmx:100800968 1776.53