Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr2421g00004 ATGGTCTCTTCTTTCCCCTCACGCTTTGTTTTGGCTCTTATGATTCTTGCCATTTTCACTATAAACCTTAGCTCTGCAAAGCAATCCAAGACAAATGGCTTAAAAATGAATGTGATTGATCGATGTTGGAGACTAAATCCCGAATGGAGAAGACACCGGTCTCAGTTAGCCTCATGTTCTGTAGGCTATGTTGGGAAGATGACAAACAACATTGGCAAAGATCTCATTAGTTATAAAGTTACTGACCCTAGTGATGATCCTATAAACCCCAAACCTGGCACCTTGAGGTATGGAGCTTCCATGATTCAAGGAAAAGTGTGGATCACATTCCAGAGGGACATGCACATTAAACTTCAGAGACCCCTTCTCATTAGTAGTTTCACCACCATTGATGGTCGAGGCACTAACATCAACATTGCTGATAATGCATGCTTAATGATCTTTAAGTCCACCAACATAATCATCCATGGCATTCGAGTTCATAATTGTAAACCTCAAGCCCCCGGGATTGTGATGGGGCCCGAAGGAAAGGTGATTCCTTTAGGCCATGTAGATGGAGATGCAATAAGATTGGTTACTGCTTCAAAGATTTGGATTGATCATAATACGCTTTATGATTGTCAAGATGGTTTGCTTGATGTAACGCGGGGTTCTACTGATGTGACTATATCCAATAACTGGTTTAGAAATCAAGACAAGGTTATGCTTCTTGGACATGATGATAGATATATGAGAGATCAGAACATGAAGGTTACCGTTGTGTACAACCATTTTGGACCTAATTGCAATCAACGCATGCCAAGGATTCGCCATGGATATGCACATGTAGCCAACAATCTTTACCAGGGATGGGTGCAATATGCCATCGGTGGAAGCATGGAACCTAGCCTCAAAAGTGAAGCTAACCTTTTCATAGCATCTATGATGGGGAGTAAGGAGGTAACATGGAGAAAGAATAGTCATATAAATGGAGATAGATGGGAATTTCATTCAGTAAGGGATGCTTTTGAAAATGGAGCCTCCTTCGCGATAACAAAAGGAGGACATGTGCCAAAGCCAAATTATAACAAAGAACAAAGTTTTAAAGTTGTTGATGCCAAATATGTAGAGAAGATAATCTCCAATTAA 1128 0.4051 MVSSFPSRFVLALMILAIFTINLSSAKQSKTNGLKMNVIDRCWRLNPEWRRHRSQLASCSVGYVGKMTNNIGKDLISYKVTDPSDDPINPKPGTLRYGASMIQGKVWITFQRDMHIKLQRPLLISSFTTIDGRGTNINIADNACLMIFKSTNIIIHGIRVHNCKPQAPGIVMGPEGKVIPLGHVDGDAIRLVTASKIWIDHNTLYDCQDGLLDVTRGSTDVTISNNWFRNQDKVMLLGHDDRYMRDQNMKVTVVYNHFGPNCNQRMPRIRHGYAHVANNLYQGWVQYAIGGSMEPSLKSEANLFIASMMGSKEVTWRKNSHINGDRWEFHSVRDAFENGASFAITKGGHVPKPNYNKEQSFKVVDAKYVEKIISN 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr2421g00004 375 Gene3D - 36 375 IPR012334 -
Mupr2421g00004 375 Pfam Pectate lyase 123 304 IPR002022 -
Mupr2421g00004 375 PANTHER PECTATE LYASE 18-RELATED 32 374 IPR045032 GO:0030570
Mupr2421g00004 375 SMART amb_all 113 310 IPR002022 -
Mupr2421g00004 375 SUPERFAMILY Pectin lyase-like 36 343 IPR011050 -
Mupr2421g00004 375 PRINTS Pollen allergen Amb family signature 185 206 IPR018082 -
Mupr2421g00004 375 PRINTS Pollen allergen Amb family signature 287 306 IPR018082 -
Mupr2421g00004 375 PRINTS Pollen allergen Amb family signature 84 109 IPR018082 -
Mupr2421g00004 375 PRINTS Pollen allergen Amb family signature 121 137 IPR018082 -
Mupr2421g00004 375 PRINTS Pollen allergen Amb family signature 327 351 IPR018082 -
Mupr2421g00004 375 PRINTS Pollen allergen Amb family signature 265 284 IPR018082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr2421g00004 Mupr-Chr2421 24616 26367 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr2421g00004 67 314 Polysaccharide Lyase AT5G09280 71.774 3.68e-144 409
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr2421g00004 K01728 - gmx:100780437 664.455