Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr2379g00001 ATGAAGCAATCTAGACCATTTATACAGCAAGATTTACCCCCCAAACAACCACGAGGAGAGCACCAAAGAGAAGCCACAAACTTGATCCTACCCCATTACAAACCAAACGGCCAAGCTGGGTCAACCCAAGCAACAAGGTTGACTGCTGCTCGACAGATAGGGGACATTGCAAAATCACACCCTCAAGACTTGACCAGTCTTCTTAAGAAGGTTTCTCAATATCTGCGCAGTAAAAATTGGGATACAAGAGTTGCAGCTGCTCATGCAATTGGTTCAATTGCTGAGAATGTTAAGCACATTAGTTTGACTGAACTTTTTGCTTCTGTTGTATCAAAAATGTCTGAGAATGGGATATGTTGTAGCATAGAGGATCTATGTGCTTGGCCTTATTTACAATCAAAAATTACTGGAAGCTCATTTAGAAGCTTTGATATGAACAAGGTGCTTGAATTTGGAGCCTTACTAGCATCGGGAGGACAGGAATATGATATTGGAAATGATAATATAAAGAACCCAAAGGAGCGATTGGTTCGTCAGAAGCAGAATCTTCGACGTCGTTTAGGTTTGGATGTCTGTGAACAATTTATGGATATCAGTGATGTAATAAGAGATGAAGATCTTATGGCATCCAAATCAGACTCGCATTTGAATGGAATAGATCGTAGAGTTTTTACATCTTGTTCTGTACATAACATCCAGAAAATGGTTGCAAACATGGTTCCTAGTGTCAAATCAAAGTGGCCAAGTGCAAGAGAACTGAATCTTTTAAAGCGTAAAGCAAAAATAAACTCTAAGGACCAAACAAAAAGCTGGTGTGAAGATGGAACTACAGAGGCATCAGGTGCTCAAAATTTGACTCCAAAAGGCACATCTCCCGATTCAGTAAATTACAGTAAGGCATTCATGGATGTTAATCATGATGAAGATGGCTTTGAGCATGATGGGGATGAACAATGGCCTTTCCACACTTTTGTTGAGCAACTTATTATCGATATGTTCGATCCTGTTTGGGAGGTACGACATGGTAGCGTGATGGCATTGAGAGAGATTTTAACACATCAAGGTGCTTCTGCTGGCGTATTTAAACATGACTCACGCATGGCTGGGACCTTGTTTATTGAATTAGAAGACAAAAGTATACCAAATATATTGAAGAGAGAGAGGGAAATTGATTTAAATATGCAAGTTCCAGCAGATGAGTTTGTTTCAAACTTGAAGAGGCCGAAACTTGAAGATGTATCATCATCAACCTCTATGGATAGTGTGATGACTTGTAGCAACGAAGGTGATATTGAAATCAGCATTAGTTCTGAAACCCATGGATGCAATTTAACTTTGGATTATGGGAATGGGCAATTTAATGGTAATTTGGTTGACATGGATCTGGAATCTTACTCTGATGGTTTACGTGATGCATGCAAGGAGCCTGCTAGTATAGCAGAGCAGAAGGGTCATTCTGATGACAATAAGATTTCTTCTGGAAATCTTAATGTGCTGAGAAATCTGCCTCAGAATTGTGAGCTGATGAACTCAGTTAAAATGGCTAGAAGTTCCTGGCTTCGAAACTGTGAATTTCTTCAAGACTGTGTGATACGCTTTTTGTGTGTGTTGTCACTTGATCGCTTTGGAGATTATGTATCTGATCAGGTTGTTGCTCCAGTGCGTGAAACCTGTGCACAGGCATTAGGTGCTGCATTTAAGTATATGCATCCAGCATTAATAAATGAAACATTGAACATATTGTTGAAAATGCAGTGTAGGCCAGAATGGGAGATTCGTCATGGCAGTCTTCTTGGTATCAAATATTTGGTTGCTGTACGCCAGGAGATGCTTTCTGATTTGCTTGGACGTGTCCTTCCTTCTTGTAAATCTGGGTTGGAGGACCCAGATGATGATGTCCGAGCAGTTGCTGCTGATGCTTTAATACCAGCTGCAGCCGCAATCGTTTCCTTGCAGGGTCAAACGTTACATTCAATTGTGATGCTTTTATGGGATATATTGCTTGATTTGGATGATTTAAGTCCATCCACTAGCAGTGTAATGAATCTGCTGGCAGAAATCTATTCTCAAGAAGAGATGGCGCCAAAGATGTATAAAGTTTTTAAATTGGGAGACAAGGAAATGGAAAATGGAATTGGTGGTTGTGGTGATGACGATGGAGAAGAAAATCCTTATGTGCTTTCAACATTGGCACCACGTTTGTGGCCCTTTATGAGGCACAGTATCACATCTGTTCGTTATTCTGCAATACGGACTTTGGAGAGGCTACTTGAAGCTGGATATAAGAGAAGCATGTCTGAGTTGTCTAGTGCTTCATTCTGGCCCTCTTTTATATTTGGAGATACCCTTAGAATTGTCTTCCAGAATCTGCTATTGGAAACAAATGAGGAAATTTTGCAATGTTCTGAGAGAGTTTGGAGTCTCCTTGTTCAGTGTTCTGTGGAGGACTTGGAGATGGCTGCGAGGTCTTTTGTGGCTTCTTGGATAGAACTTGCATCTACACCATTTGGCTCAGCGTTAGATGCCTCAAAGATGTATTGGCCTGTTGCCTTTCCGCGAAAAAGTCAAATTAGAGCAGCTGCTAAAATGAGAGCTGCAAAGATTGAAAATGAATGTGGTGTGGATTTTAGTCTGGATTCTACCAAAGGAACTATTCCACAGGATAGAAATGGAGATGTTCCTATGAATTCTGTTAAGATAGTTGTTGGTGCTGATGTGGACACGTCTGTGACTCATACTCGGGTAGTTACGGCAACTGCTTTGGGAATTTTTGCTTCTAAGCTGCCAGAGGGTTCCTTAAAACATGTCATTGATCCACTGTGGAGCTCTCTAACATCATTGTCTGGTGTTCAACGCCAGGTTGCATCTATGGTACTTATTTCTTGGTTCAAGGAGATTAAGAACAGGAATTTGTCCAAAAACCTTGATGGTATCCCTGGTTCCCTCAAAGATTGGTTGCTGGACTTATTAGCATGTTCTGACCCAGCATTCCCTACAAAAGATTCACTTCTTCCTTATGCTGAGCTTTCTAGAACTTATGCAAAGATGCGTAGTGAGGCTGGTCAATTGCTAAATGCAGTCAAGTCTTCTGGTATGTTTAATGAGTTATTGGCAGCGACCCAGATTGAGTTGGATCGCTTGAGTGTGGATGATGCCATTGGTTTTGCCTCAAAAATTCCAGCATTGTCTAGTGATAGTTCTGCAAATGAATCCTTGGGAAAGAATATTATGGATGATATTGAATCCTCCAAACAGCGACTCTTGACCACTTCTGGATATTTAAAATGTGTTCAGAGTAATTTGCATGTTACAGTCACATCTGCAGTTGCAGCTGCAGTTGTCTGGATGTCTGAATTTCCTACACGACTTACCCCAATCATTTTGCCTTTGATGGCTTCAATCAGACGAGAGCAGGAGGAAATACTGCAAATGAAGTCAGCTGAGGCTATTGCCGAGCTAATGTATCACTGTGTTGCACGTAGACCTTGCCCCAACGATAAATTAATTAAGAATATATGTAGTTTAACTTGCATGGATCCCTCTGAGACCCCTCAAGCCAAATCCCTTTGTACCATGGAGAGTATTGATGACCATGGTCTTCTGTCTTTTAGAACTCCTGTGAGCAAACAGAAATCAAAGGTCCATGTGCTGGCCGGTGAAGATCGGTCAAAGGTGGAGGGATTTTTAAGTAGACGCGGATCTGAGCTATCACTGAGGCTTCTATGTGAAAAGTTTGGTGCGTCATTATTTGATAAGCTTCCTAAGCTGTGGGATTGCCTTACTGAAGTGCTTAAGCCCAGCTCCTCTGAATCTCTACTTGTCACTAATGAAAAGAAAGTTACTGTGTCTATTGAGTCTGTTAGTGATCCTCAGACCTTGATTAACAATATCCAGGTGGTGCGCTCTGTTGCTCCTGTGTTAAATGAGGAGTTGAAGCCAAAACTGTTGACACTTCTCCCATGCATTTTCATGTGTGTTCAGCATTCTCATGTTGCAGTTAGATTAGCTGCTTCACGCTGCATCACTTCCATGGCACTGTCAATGACTGTGAAAGTTATGGGAGCTGTGGTCGAAAATGCTATCCCTATGTTGGAAGATGCATCATCAGTTTATGCTCGGCAAGGAGCAGGCATGTTGATTAGTTTTCTTGTTCAGGGGCTAGGTGTAGAGTTGGTCCCTTATGCTCCTCTATTGGTGGTTCCACTTCTAAGGTGCATGAGCGATTGTGATCAGTCTGTCAGACAGAGTGTGACCCATAGTTTTGCTGCTCTTGTACCTTTACTTCCTTTGGCACGAGGCCTTCCTCAACCAATTGGATTGGGGGAAGGTGTATCTAGAAATGCAGAAGATTTGAAGTTTTTGGAACAACTACTTGACAACTCTCATATTGAAGATTACAAGTTGTGCACTGAATTGAAAGTAACATTGAGGAGGTATCAGCAGGAAGGCATAAATTGGCTAGCTTTTTTGAAGCGTTTCAAGCTTCATGGAATTTTATGTGATGACATGGGACTTGGAAAGACACTTCAAGCATCATCAATTGTGGCCTCTGATATAGCTGAGCATCGAACTTCAATTGGGAATGAGGATCTTCTGCCATCTTTAATTATTTGCCCATCAACTCTAGTTGGGCACTGGGCCTTTGAGATAGAGAAGTATATTGATGTTTCAGTTATATCTAATCTTCAATATGTTGGTTCTGCTCAAGAGAGAATGCTTCTTCGAGATAATTTTTCCAAACATAATGTCATCATAACATCATATGATGTTGTCCGTAAAGATATTGATTTTTTGGGACAGCTGTTATGGAATTACTGCATTTTAGATGAAGGGCATATAATCAAGAATGCCAAGTCTAAAGTTACACTTGCTGTAAAACAGTTGAAAGCCCAACACCGCTTGATATTGAGTGGGACACCTATACAGAATAACATAATGGACTTGTGGTCCCTTTTTGATTTTCTGATGCCTGGATTTCTTGGAACTGAGAGACAGTTCCAAGCCACATATGGAAAACCACTTTTAGCTGCAAGAGATCCAAAATGCTCTGCTAAGGATGCTGAAGCAGGAGCTCTTGCTATGGAGGCCTTGCATAAGCAGGCAATGCCTTTCCTCCTTCGTAGGACAAAGAATGAAGTTTTGTCTGATCTGCCAGAGAAAATAATTCAAGATAGATACTGTGATTTGAGCCCTGTACAACTTCAACTTTATGAACAGTTTTCTGGTTCTCGTGTAAAACAAGAAATGTCATCTATTGTAACAACGAATGAGTCTGCAGCAGCAGAAGGAAGTAGCAGTTCTACTAAAGCATCTTCACACGCGCTCCAATACTTGCTAAAACTATGTAGTCATCCATTGCTTGTCATTGGTGAGAAGATTCCAGATTCACTGTCTTCCATCCTCTCAGGACTGTTTCCTGCTGGATCTGATGTTATTTCAGAACTTCACAAACTCTCTCACTCCCCAAAATTAGTTGCTCTTCATGAGATTCTTGAAGAGTGTGGAATTGGAGTTGATAATTCAGGTTCTGAGGGTGCGGTTAATGTTGGGCAGCATAGGGTGTTGATATTTGCTCAACATAAGGCTTTCCTGGATATAATTGAAAGAGATTTGTTTCAGACACACATGAAAAGCGTCACATATTTGCGGTTGGATGGATCAGTTGAGCCAGAAAAGCGTTTTGATATTGTCAAAGCTTTTAATTCAGACCCTACCATTGATGTCTTACTGCTTACAACACATGTGGGTGGGCTTGGTTTGAACCTGACATCTGCAGATACCCTTGTTTTTGTGGAGCATGATTGGAATCCGATGCGAGACCATCAGGCTATGGATAGAGCACACAGGTTAGGTCAGAAAAAAGTAGTTAATGTCCATCGGCTAATAATGCGTGGTACTTTGGAAGAGAAAGTTATGAGTCTACAGAGGTTCAAAGTGTCAGTGGCTAATGCTGTCATTAATGCGGAAAATGCTAGTATGAAAACAATGAATACAGATCAGTTGCTTGATTTATTTGCATCAGCAGAAACCTCCAAGAAGGGGGCATCTGTTGCGAAGAGTTCGGAGAACAACTCTGATGGAGATGCTAAATTAGTAGGCAGTGGGAAGGGATTGAAATCAATACTTGGGGGATTGGAGGAGCTATGGGACCAATCACAATATACAGAGGAGTACAATCTGAAATTCACCTAG 6192 0.412 MKQSRPFIQQDLPPKQPRGEHQREATNLILPHYKPNGQAGSTQATRLTAARQIGDIAKSHPQDLTSLLKKVSQYLRSKNWDTRVAAAHAIGSIAENVKHISLTELFASVVSKMSENGICCSIEDLCAWPYLQSKITGSSFRSFDMNKVLEFGALLASGGQEYDIGNDNIKNPKERLVRQKQNLRRRLGLDVCEQFMDISDVIRDEDLMASKSDSHLNGIDRRVFTSCSVHNIQKMVANMVPSVKSKWPSARELNLLKRKAKINSKDQTKSWCEDGTTEASGAQNLTPKGTSPDSVNYSKAFMDVNHDEDGFEHDGDEQWPFHTFVEQLIIDMFDPVWEVRHGSVMALREILTHQGASAGVFKHDSRMAGTLFIELEDKSIPNILKREREIDLNMQVPADEFVSNLKRPKLEDVSSSTSMDSVMTCSNEGDIEISISSETHGCNLTLDYGNGQFNGNLVDMDLESYSDGLRDACKEPASIAEQKGHSDDNKISSGNLNVLRNLPQNCELMNSVKMARSSWLRNCEFLQDCVIRFLCVLSLDRFGDYVSDQVVAPVRETCAQALGAAFKYMHPALINETLNILLKMQCRPEWEIRHGSLLGIKYLVAVRQEMLSDLLGRVLPSCKSGLEDPDDDVRAVAADALIPAAAAIVSLQGQTLHSIVMLLWDILLDLDDLSPSTSSVMNLLAEIYSQEEMAPKMYKVFKLGDKEMENGIGGCGDDDGEENPYVLSTLAPRLWPFMRHSITSVRYSAIRTLERLLEAGYKRSMSELSSASFWPSFIFGDTLRIVFQNLLLETNEEILQCSERVWSLLVQCSVEDLEMAARSFVASWIELASTPFGSALDASKMYWPVAFPRKSQIRAAAKMRAAKIENECGVDFSLDSTKGTIPQDRNGDVPMNSVKIVVGADVDTSVTHTRVVTATALGIFASKLPEGSLKHVIDPLWSSLTSLSGVQRQVASMVLISWFKEIKNRNLSKNLDGIPGSLKDWLLDLLACSDPAFPTKDSLLPYAELSRTYAKMRSEAGQLLNAVKSSGMFNELLAATQIELDRLSVDDAIGFASKIPALSSDSSANESLGKNIMDDIESSKQRLLTTSGYLKCVQSNLHVTVTSAVAAAVVWMSEFPTRLTPIILPLMASIRREQEEILQMKSAEAIAELMYHCVARRPCPNDKLIKNICSLTCMDPSETPQAKSLCTMESIDDHGLLSFRTPVSKQKSKVHVLAGEDRSKVEGFLSRRGSELSLRLLCEKFGASLFDKLPKLWDCLTEVLKPSSSESLLVTNEKKVTVSIESVSDPQTLINNIQVVRSVAPVLNEELKPKLLTLLPCIFMCVQHSHVAVRLAASRCITSMALSMTVKVMGAVVENAIPMLEDASSVYARQGAGMLISFLVQGLGVELVPYAPLLVVPLLRCMSDCDQSVRQSVTHSFAALVPLLPLARGLPQPIGLGEGVSRNAEDLKFLEQLLDNSHIEDYKLCTELKVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASSIVASDIAEHRTSIGNEDLLPSLIICPSTLVGHWAFEIEKYIDVSVISNLQYVGSAQERMLLRDNFSKHNVIITSYDVVRKDIDFLGQLLWNYCILDEGHIIKNAKSKVTLAVKQLKAQHRLILSGTPIQNNIMDLWSLFDFLMPGFLGTERQFQATYGKPLLAARDPKCSAKDAEAGALAMEALHKQAMPFLLRRTKNEVLSDLPEKIIQDRYCDLSPVQLQLYEQFSGSRVKQEMSSIVTTNESAAAEGSSSSTKASSHALQYLLKLCSHPLLVIGEKIPDSLSSILSGLFPAGSDVISELHKLSHSPKLVALHEILEECGIGVDNSGSEGAVNVGQHRVLIFAQHKAFLDIIERDLFQTHMKSVTYLRLDGSVEPEKRFDIVKAFNSDPTIDVLLLTTHVGGLGLNLTSADTLVFVEHDWNPMRDHQAMDRAHRLGQKKVVNVHRLIMRGTLEEKVMSLQRFKVSVANAVINAENASMKTMNTDQLLDLFASAETSKKGASVAKSSENNSDGDAKLVGSGKGLKSILGGLEELWDQSQYTEEYNLKFT 2063
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr2379g00001 2063 SMART ultradead3 1472 1669 IPR014001 -
Mupr2379g00001 2063 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1709 2007 IPR027417 -
Mupr2379g00001 2063 Gene3D - 520 702 IPR011989 -
Mupr2379g00001 2063 Gene3D - 1718 2032 IPR027417 -
Mupr2379g00001 2063 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1488 1658 IPR014001 -
Mupr2379g00001 2063 FunFam TATA-binding protein-associated factor BTAF1 530 710 - -
Mupr2379g00001 2063 SUPERFAMILY ARM repeat 43 1511 IPR016024 -
Mupr2379g00001 2063 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1458 1708 IPR027417 -
Mupr2379g00001 2063 CDD SF2_C_SNF 1820 1962 - -
Mupr2379g00001 2063 FunFam B-TFIID TATA-box-binding protein-associated factor 1 1446 1707 - -
Mupr2379g00001 2063 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1841 1997 IPR001650 -
Mupr2379g00001 2063 FunFam TATA-binding protein-associated factor BTAF1 1223 1434 - -
Mupr2379g00001 2063 PANTHER TATA-BINDING PROTEIN-ASSOCIATED FACTOR 172 39 2061 IPR044972 GO:0003677|GO:0016887|GO:0017025
Mupr2379g00001 2063 FunFam TATA-binding protein-associated factor 1718 2033 - -
Mupr2379g00001 2063 MobiDBLite consensus disorder prediction 267 294 - -
Mupr2379g00001 2063 MobiDBLite consensus disorder prediction 273 294 - -
Mupr2379g00001 2063 SMART helicmild6 1865 1951 IPR001650 -
Mupr2379g00001 2063 Gene3D - 1448 1707 IPR038718 -
Mupr2379g00001 2063 Pfam SNF2-related domain 1494 1785 IPR000330 GO:0005524|GO:0140658
Mupr2379g00001 2063 MobiDBLite consensus disorder prediction 1 21 - -
Mupr2379g00001 2063 Pfam Domain of unknown function (DUF3535) 805 1259 IPR022707 -
Mupr2379g00001 2063 Pfam Helicase conserved C-terminal domain 1849 1951 IPR001650 -
Mupr2379g00001 2063 CDD DEXHc_Mot1 1476 1708 IPR044078 GO:0005524
Mupr2379g00001 2063 Gene3D - 36 113 IPR011989 -
Mupr2379g00001 2063 Gene3D - 1230 1431 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr2379g00001 Mupr-Chr2379 728 20108 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr2379g00001 1534 2005 RAD5 or RAD16-like Gene Family AT5G22750 27.965 4.59e-41 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mupr2379g00001 DUF3535 2e-105 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr2379g00001 K15192 - gmx:100777977 3654.76